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NNmapper constructs reference reads library and calculates the Euclidean distances between library reads and query reads. NNmapper can map a query read (1) to the library read that gives the smallest distance (most similar), (2) to the library read that gives the smallest distance while the distance is smaller than a threshold, or (3) all library reads that have distances smaller than threshold.
NNmapper has high error-tolerant and is suitable for any read lengths. NN reports all mapping locations for multi-reads.
MATLAB installation required. Mac or Linux system required.
Features
- Distance-based short reads mapping
Categories
Bio-InformaticsLicense
GNU General Public License version 3.0 (GPLv3)Follow NNmapper
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