miRDP2

miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA annotation criteria, the accuracy of miRDP2 is also markedly improved. Our results demonstrate miRDP2 as a fast and accurate tool for analyzing the miRNA transcriptome in plants.
Reference: https://doi.org/10.1093/bioinformatics/bty972

Features

small RNA
microRNA(miRNA）
Next Generation Sequencing (NGS)
Perl

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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miRDP2 Web Site

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dongfy88 Posted 2018-08-05

Really helpful to parse sRNA data to achieve miRNAs in plants

Additional Project Details

Operating Systems

Linux

Languages

English

Intended Audience

Science/Research

Programming Language

Perl

Database Environment

Perl DBI/DBD

Related Categories

Perl Information Analysis Software

Registered

2018-05-04

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