Download
GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead and complexity of managing the data and the biological entities at hand. GenOO-HTS has been designed to be flexible, easily extendable with modular structure and minimal requirements for external tools and libraries.
Features
- Organize biological entities as perl objects (genomic regions, genes, transcripts, introns/exons, etc)
- Organize sequencing entities as perl objects/attributes (sequencing reads, alignments, etc)
- Make I/O from widely used file formats easy (SAM, BED, FASTA, FASTQ)
- Be consistent and easily extendable
Project Samples
Categories
Bio-InformaticsFollow GenOO-HTS
Other Useful Business Software
Gemini 3 and 200+ AI Models on One Platform
Build generative AI apps with Vertex AI. Switch between models without switching platforms.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of GenOO-HTS!
