Search Results for "svdetect"

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Showing 4 open source projects for "svdetect"

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1

svdetect.sh

svdetect.sh is a shell script to run SVDetect to detect SV in exome-seq and Shatterproof to detect chromothripsis. ***Update*** The output files of SVDetect can be annotated by genes with multi-threading.

Downloads: 0 This Week

Last Update: 2019-10-08
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2

svdetectcnv.sh

shell script to run SVDetect with baseline adjustment

svdetectcnv.sh is a shell script to run SVDetect CNV mode. In addition to the original outputs of SVDetect, the script also outputs an adjusted bed.graph with baseline adjusted to the average Log2Ratio of a certain chromosome or all chromosomes, and a sorted density file. **Update*** New version uses the splitted bam produced by exome_test.sh and allows for multithreading to split bam.

Downloads: 0 This Week

Last Update: 2019-10-05
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3

contra.sh

contra.sh is a shell script to run contra-cnv mode. In addition to the original outputs of SVDetect, the script also outputs and bed.graph and an adjusted bed.graph with baseline adjusted to the average Log2Ratio of a certain chromosome or all chromosomes, and a sorted density file.

Downloads: 0 This Week

Last Update: 2019-10-01
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4

SVDetect

A tool to identify genomic structural variations from paired-end and mate-pair sequencing data

Downloads: 0 This Week

Last Update: 2013-04-24
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