Cufflinks

Cufflinks

Cole Trapnell
Modsurfer

Modsurfer

Dylibso
+
+

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About

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.

About

Modsurfer provides ops & dev teams with the first system-of-record and diagnostics application to search, browse, validate, audit, and investigate WebAssembly binaries. At-a-glance insights into WebAssembly module data (code size & complexity, imports/exports & more). Search for details about modules (hash, ID, function names, strings, namespaces, errors & more). Easily audit and track all the WebAssembly code in your stack. Debug & triage issues otherwise difficult to pinpoint in opaque WebAssembly format. Write or generate a "check file" to track binary requirements. If a module fails validation, a helpful report is created to get things back on track. Validate your modules for import/export existence, function signature, security compliance, runtime complexity, & more. The CLI puts all your Modsurfer data at your fingertips and is the easiest way to interact with the Modsurfer desktop or enterprise server.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Scientists requiring a solution to analyze their RNA-Seq samples

Audience

Development teams seeking a diagnostics solution to search, browse, validate, audit and investigate WebAssembly binaries

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Pricing

Free
Free Version
Free Trial

Pricing

Free
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Cole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/

Company Information

Dylibso
United States
dylibso.com/products/modsurfer/

Alternatives

QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench

QIAGEN Digital Insights

Alternatives

AssemblyScript

AssemblyScript

The AssemblyScript Project
Extism

Extism

Dylibso
OmnibusX

OmnibusX

OmnibusX Company Limited

Categories

Categories

Integrations

GitHub
PostgreSQL
WebAssembly

Integrations

GitHub
PostgreSQL
WebAssembly
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