https://sourceforge.net/p/svtoolkit/activity/Recent activity for Structural Variation ToolkitenThu, 12 Mar 2015 06:45:57 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#5043syjandyThu, 12 Mar 2015 06:45:57 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#5043https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#5043Is higher JAVA version OK? such as 0.8 or later.syjandyThu, 12 Mar 2015 02:04:04 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#5043https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#6132I don't know. Maybe it's the "ea" version of java 7 (which I'm guessing stands for...Bob HandsakerWed, 11 Mar 2015 13:07:28 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#6132https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#f405$java -version java version "1.7.0_60-ea" Java(TM) SE Runtime Environment (build...syjandyWed, 11 Mar 2015 05:25:13 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#f405https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#e9c3Can you try these: java -version java -jar /usr/bin/svtoolkit/lib/SVToolkit.jar unzip...Bob HandsakerWed, 11 Mar 2015 03:39:16 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#e9c3https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#d123$cat myCNV.sh export SV_DIR=/usr/bin/svtoolkit export JAVA_HOME=/usr/latest/jdk1.7.0_60...syjandyWed, 11 Mar 2015 01:45:23 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#d123https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#16d4It would be helpful to see your whole command line. I would guess you are picking...Bob HandsakerTue, 10 Mar 2015 12:00:29 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#16d4https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#a478Hi Bob, When I run GenomeSTRiP CNVDiscoveryPipeline walker in SGE cluster system...syjandyTue, 10 Mar 2015 08:49:55 -0000https://sourceforge.net/p/svtoolkit/wiki/Home/?limit=25#a478