https://sourceforge.net/p/sloppycell/activity/Recent activity for SloppyCellenTue, 19 Dec 2017 23:18:35 -0000https://sourceforge.net/p/sloppycell/git/merge-requests/1/fix crash in newer versions of scipyBryan DanielsTue, 19 Dec 2017 23:18:35 -0000https://sourceforge.net/p/sloppycell/git/merge-requests/1/https://sourceforge.net/p/sloppycell/git/ci/a0b474ce26acf9775353415ab2255d8c47447507/Fixed optimization routine passing iterations parameter in the wrong placeKeeyan S GhoreshiThu, 07 Sep 2017 22:50:36 -0000https://sourceforge.net/p/sloppycell/git/ci/a0b474ce26acf9775353415ab2255d8c47447507/https://sourceforge.net/p/sloppycell/git/ci/ef899614f3892bc7132796ba94c0496f1c958b7e/Changed backslash to forward slash and sleep before showing graphsKeeyan S GhoreshiThu, 07 Sep 2017 22:50:36 -0000https://sourceforge.net/p/sloppycell/git/ci/ef899614f3892bc7132796ba94c0496f1c958b7e/https://sourceforge.net/p/sloppycell/git/ci/c9bcf60105c7e3a21780effeccc2f0e5fe7530cd/Changed backslashes to forwardKeeyan S GhoreshiThu, 07 Sep 2017 22:50:36 -0000https://sourceforge.net/p/sloppycell/git/ci/c9bcf60105c7e3a21780effeccc2f0e5fe7530cd/https://sourceforge.net/p/sloppycell/git/ci/7682cbd2454e4070f9f7c075265873c2490a0829/Merge remote-tracking branch 'origin/master'Keeyan S GhoreshiThu, 07 Sep 2017 22:50:36 -0000https://sourceforge.net/p/sloppycell/git/ci/7682cbd2454e4070f9f7c075265873c2490a0829/https://sourceforge.net/p/sloppycell/git/ci/2ab615387478f6bd34601dde9ec3fa6bdb44af21/Merge commit '1b4fd6f16413a01d2443e52606fbe1f888635e38'Ryan GutenkunstThu, 07 Sep 2017 17:17:16 -0000https://sourceforge.net/p/sloppycell/git/ci/2ab615387478f6bd34601dde9ec3fa6bdb44af21/https://sourceforge.net/p/sloppycell/git/ci/a200a5a80a67780c9c0cd76f1062fae2dfc4e0b5/Add pdf version of user documentation to repository.Ryan GutenkunstThu, 07 Sep 2017 17:17:16 -0000https://sourceforge.net/p/sloppycell/git/ci/a200a5a80a67780c9c0cd76f1062fae2dfc4e0b5/https://sourceforge.net/p/sloppycell/git/ci/efcee0b7a7a372bc065db98dc5cadf9a0426d041/Updated format to match parsing changesKeeyan S GhoreshiTue, 05 Sep 2017 05:05:27 -0000https://sourceforge.net/p/sloppycell/git/ci/efcee0b7a7a372bc065db98dc5cadf9a0426d041/https://sourceforge.net/p/sloppycell/git/ci/1b4fd6f16413a01d2443e52606fbe1f888635e38/Updated saving methods and added ability to output .CSV for trajectories (not ensembleTrajectories yet)Keeyan S GhoreshiTue, 05 Sep 2017 05:05:27 -0000https://sourceforge.net/p/sloppycell/git/ci/1b4fd6f16413a01d2443e52606fbe1f888635e38/https://sourceforge.net/p/sloppycell/git/ci/df35a814fe0568263ec788666662f6b8621a3b9f/Bug fix for developer documentationRyan GutenkunstSun, 03 Sep 2017 20:56:34 -0000https://sourceforge.net/p/sloppycell/git/ci/df35a814fe0568263ec788666662f6b8621a3b9f/https://sourceforge.net/p/sloppycell/git/ci/4efb86c2ca15a337a06dd57c409763b0f835973c/Remove parallelization and graphviz discussion from user manual, which aren't really supported anymore.Ryan GutenkunstThu, 31 Aug 2017 20:49:38 -0000https://sourceforge.net/p/sloppycell/git/ci/4efb86c2ca15a337a06dd57c409763b0f835973c/https://sourceforge.net/p/sloppycell/git/ci/417b65307b53b291d657ccb27c9178deed07cb88/Fix two small bugs in developer documentationRyan GutenkunstThu, 31 Aug 2017 20:49:38 -0000https://sourceforge.net/p/sloppycell/git/ci/417b65307b53b291d657ccb27c9178deed07cb88/https://sourceforge.net/p/sloppycell/git/ci/a198b625d1964989681a58f01d16b7aae28b237b/Updates to user manual. Adding pdf files so it always compiles.Ryan GutenkunstThu, 31 Aug 2017 20:49:38 -0000https://sourceforge.net/p/sloppycell/git/ci/a198b625d1964989681a58f01d16b7aae28b237b/https://sourceforge.net/p/sloppycell/git/ci/8178fe020514e6f7ecb21a281f2f7d1dec6095a4/Updated command line input moduleKeeyan S GhoreshiTue, 15 Aug 2017 23:59:06 -0000https://sourceforge.net/p/sloppycell/git/ci/8178fe020514e6f7ecb21a281f2f7d1dec6095a4/https://sourceforge.net/p/sloppycell/git/ci/55e2ee6ef516b19248aa08b039f2c4086fd50a85/Re-added temp folerKeeyan S GhoreshiMon, 14 Aug 2017 20:27:45 -0000https://sourceforge.net/p/sloppycell/git/ci/55e2ee6ef516b19248aa08b039f2c4086fd50a85/https://sourceforge.net/p/sloppycell/git/ci/6b781b757997009a73e9d560b161c9e3d9fd1ad4/Emptied temp folderKeeyan S GhoreshiMon, 14 Aug 2017 20:26:17 -0000https://sourceforge.net/p/sloppycell/git/ci/6b781b757997009a73e9d560b161c9e3d9fd1ad4/https://sourceforge.net/p/sloppycell/git/ci/954bf28eeb59f52c6076db989d8cb9fae593245a/Capitalized "example"Keeyan S GhoreshiMon, 14 Aug 2017 20:23:23 -0000https://sourceforge.net/p/sloppycell/git/ci/954bf28eeb59f52c6076db989d8cb9fae593245a/https://sourceforge.net/p/sloppycell/git/ci/4f08c2f1e3432d772be11e113c370ddde10a22a0/Added temp folder to put saved data in.Keeyan S GhoreshiMon, 14 Aug 2017 20:20:55 -0000https://sourceforge.net/p/sloppycell/git/ci/4f08c2f1e3432d772be11e113c370ddde10a22a0/https://sourceforge.net/p/sloppycell/git/ci/43f54a7de0447e6c5428802314227a225f65844c/Added forgotten input statementKeeyan S GhoreshiMon, 14 Aug 2017 20:20:55 -0000https://sourceforge.net/p/sloppycell/git/ci/43f54a7de0447e6c5428802314227a225f65844c/https://sourceforge.net/p/sloppycell/git/ci/61d778bff8f870a21aa51d16e33908bbe5304b51/Updated XML examplesKeeyan S GhoreshiMon, 14 Aug 2017 20:20:55 -0000https://sourceforge.net/p/sloppycell/git/ci/61d778bff8f870a21aa51d16e33908bbe5304b51/https://sourceforge.net/p/sloppycell/git/ci/b32b96ea70b139d2df3d414912427eef243eb6ba/Changed to the updated versionKeeyan S GhoreshiMon, 14 Aug 2017 20:20:55 -0000https://sourceforge.net/p/sloppycell/git/ci/b32b96ea70b139d2df3d414912427eef243eb6ba/https://sourceforge.net/p/sloppycell/git/ci/2fd53b910d0bce3b01cfc5841c32e58052373e25/Merge select files from XML_Interface development branchRyan GutenkunstMon, 14 Aug 2017 17:29:34 -0000https://sourceforge.net/p/sloppycell/git/ci/2fd53b910d0bce3b01cfc5841c32e58052373e25/https://sourceforge.net/p/sloppycell/git/ci/f02a27aaf9f9ec42bb30752c3666df6a4a919271/Correct issue arising from Keeyan changing capitalization of directory namesRyan GutenkunstMon, 14 Aug 2017 17:29:34 -0000https://sourceforge.net/p/sloppycell/git/ci/f02a27aaf9f9ec42bb30752c3666df6a4a919271/https://sourceforge.net/p/sloppycell/git/ci/9dd9a2cee672883b48e165296850c5ae2eb202e0/Simplify naming of XML examplesRyan GutenkunstMon, 14 Aug 2017 17:29:34 -0000https://sourceforge.net/p/sloppycell/git/ci/9dd9a2cee672883b48e165296850c5ae2eb202e0/https://sourceforge.net/p/sloppycell/git/ci/cc8ca49afe47b333fb8af78580d21cbb1fcde8b0/Remodeling project structureKeeyan S GhoreshiFri, 11 Aug 2017 21:33:41 -0000https://sourceforge.net/p/sloppycell/git/ci/cc8ca49afe47b333fb8af78580d21cbb1fcde8b0/https://sourceforge.net/p/sloppycell/git/ci/b35e8b7ad7aa9d78aef37b985c9e33a472956e55/Add README and setup for PyPI submissionRyan GutenkunstFri, 11 Aug 2017 19:50:43 -0000https://sourceforge.net/p/sloppycell/git/ci/b35e8b7ad7aa9d78aef37b985c9e33a472956e55/https://sourceforge.net/p/sloppycell/git/ci/9113cee11ed646178baf6e5520674976d6e5a64c/Further simplify setup.pyRyan GutenkunstFri, 11 Aug 2017 19:50:43 -0000https://sourceforge.net/p/sloppycell/git/ci/9113cee11ed646178baf6e5520674976d6e5a64c/https://sourceforge.net/p/sloppycell/git/ci/02d9e9761fe1135cf13eec114f4e2b032bed1fb9/Add PyPI info to setup.pyRyan GutenkunstFri, 11 Aug 2017 19:50:43 -0000https://sourceforge.net/p/sloppycell/git/ci/02d9e9761fe1135cf13eec114f4e2b032bed1fb9/https://sourceforge.net/p/sloppycell/git/ci/b04d058cba8543ac4e8064d2914edb40adecbdcd/Add copy of BSD licenseRyan GutenkunstFri, 11 Aug 2017 19:50:43 -0000https://sourceforge.net/p/sloppycell/git/ci/b04d058cba8543ac4e8064d2914edb40adecbdcd/https://sourceforge.net/p/sloppycell/git/ci/64aa302db549521f1e3c51d252a2ae79e67f6106/Reorganize package to match standard distutils layout (for future submission to PyPI)Ryan GutenkunstFri, 11 Aug 2017 19:50:43 -0000https://sourceforge.net/p/sloppycell/git/ci/64aa302db549521f1e3c51d252a2ae79e67f6106/https://sourceforge.net/p/sloppycell/git/ci/76c5b5a135037dfbe56be995028aee7f612f6499/TestingKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/76c5b5a135037dfbe56be995028aee7f612f6499/https://sourceforge.net/p/sloppycell/git/ci/2dbcb5f58539d61b1b858a82b6034aed4b28cf23/TestingKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/2dbcb5f58539d61b1b858a82b6034aed4b28cf23/https://sourceforge.net/p/sloppycell/git/ci/2cc2ca971026d8624f8136977c24cf03d9668f5d/Added files for testing on other machineKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/2cc2ca971026d8624f8136977c24cf03d9668f5d/https://sourceforge.net/p/sloppycell/git/ci/2c6541237d907d5d520d9d59d46c37992161f0a9/Added preliminary command line handler and .scell file parserKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/2c6541237d907d5d520d9d59d46c37992161f0a9/https://sourceforge.net/p/sloppycell/git/ci/263460b6a35a25c0264940443343730cee9c2f8e/Added example constructor, prior defining functionality, and csv data parsingKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/263460b6a35a25c0264940443343730cee9c2f8e/https://sourceforge.net/p/sloppycell/git/ci/81e8e9dd78fd0957428d0e380ca6195e19371400/Updated some small things before mergingKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/81e8e9dd78fd0957428d0e380ca6195e19371400/https://sourceforge.net/p/sloppycell/git/ci/5c8f95038b823d6adab0d26600fd30414ab50da9/Small changes to syntaxKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/5c8f95038b823d6adab0d26600fd30414ab50da9/https://sourceforge.net/p/sloppycell/git/ci/693b2e2356d473b3b99dffd207aa0dbe7d8e9680/Adding the jak_stat xml file back to the repository. Don't know why it wasn't there anymore.Keeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/693b2e2356d473b3b99dffd207aa0dbe7d8e9680/https://sourceforge.net/p/sloppycell/git/ci/04118a29c8717ad13e3ead7b35cc9f13e2705b71/Switched to XML file parsing, but kept .scell file parsing just in caseKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/04118a29c8717ad13e3ead7b35cc9f13e2705b71/https://sourceforge.net/p/sloppycell/git/ci/8bba817d426ba19b4e66b2492f9de4c1de983121/copied from dropboxKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/8bba817d426ba19b4e66b2492f9de4c1de983121/https://sourceforge.net/p/sloppycell/git/ci/2e77218806dcbaf8e84cf18a482a708c6b74405d/Created source folder and root packageKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/2e77218806dcbaf8e84cf18a482a708c6b74405d/https://sourceforge.net/p/sloppycell/git/ci/25c2dfbbde784beb9d457aa3348d9459f8f1b390/Added network creation/modification supportKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/25c2dfbbde784beb9d457aa3348d9459f8f1b390/https://sourceforge.net/p/sloppycell/git/ci/cb21acb48844f74b35e611adfa1aa3cde30b5ddc/Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into DevelopmentKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/cb21acb48844f74b35e611adfa1aa3cde30b5ddc/https://sourceforge.net/p/sloppycell/git/ci/e45e117aae4a4086e821718c0b25a7b6faed9fa2/Switched over to full xml implementation, added new experiment constructorKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/e45e117aae4a4086e821718c0b25a7b6faed9fa2/https://sourceforge.net/p/sloppycell/git/ci/c9bc2298763fffca6cb86fdad1e44748ea897105/added debugging linesKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/c9bc2298763fffca6cb86fdad1e44748ea897105/https://sourceforge.net/p/sloppycell/git/ci/08e60d1e0de12360283ce9a3b15bb81a5b544ee1/Adding the jak-stat example xml file backGitHubFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/08e60d1e0de12360283ce9a3b15bb81a5b544ee1/https://sourceforge.net/p/sloppycell/git/ci/613e79ae537a062ef3cbd18981768b66d464d02b/ddaskr changes (fortran removal)Keeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/613e79ae537a062ef3cbd18981768b66d464d02b/https://sourceforge.net/p/sloppycell/git/ci/dddf7c4e4aa83cfd0bb1572db2d81540dd3b1301/Merge remote-tracking branch 'sloppy/Development' into DevelopmentKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/dddf7c4e4aa83cfd0bb1572db2d81540dd3b1301/https://sourceforge.net/p/sloppycell/git/ci/934ec872d167591a74470bbf5b4730435054d1ac/Added trajectory plotting action routineKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/934ec872d167591a74470bbf5b4730435054d1ac/https://sourceforge.net/p/sloppycell/git/ci/c7b7c17a70f225398bb18f8a21262e34fd9bde12/Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into DevelopmentKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/c7b7c17a70f225398bb18f8a21262e34fd9bde12/https://sourceforge.net/p/sloppycell/git/ci/8508b542cc2f28ef0f59b5bcb2fc6419e29ae9c6/Small changes to ensure file deletionKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/8508b542cc2f28ef0f59b5bcb2fc6419e29ae9c6/https://sourceforge.net/p/sloppycell/git/ci/4e4cafcddbdd68b4add3c56dd0211aa8aa5d3554/Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into DevelopmentKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/4e4cafcddbdd68b4add3c56dd0211aa8aa5d3554/https://sourceforge.net/p/sloppycell/git/ci/d930b214995ca8a24f2766faee0d52444cb8719b/Took care of all the TODOs, mostly small fixes and getting rid of any hard-codingKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/d930b214995ca8a24f2766faee0d52444cb8719b/https://sourceforge.net/p/sloppycell/git/ci/71d2ee3488e45d2a0e77c844cb72ebd0cc6e68dd/(Mostly) Fixed C compiling issue in NetworkModKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/71d2ee3488e45d2a0e77c844cb72ebd0cc6e68dd/https://sourceforge.net/p/sloppycell/git/ci/55f278e229691c86dd05f6f5a7a8810e6d7ea7d9/Streamlined saving process, added ensemble action routine, and fixed various bugs related to saving/loading data. Made everything much more modular.Keeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/55f278e229691c86dd05f6f5a7a8810e6d7ea7d9/https://sourceforge.net/p/sloppycell/git/ci/e996d3094449706d5051718b9760f43b70b6c738/Redid method for action routine parsing. Also modified Network_Mod to delete generated code even in the event of DLL failure.Keeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/e996d3094449706d5051718b9760f43b70b6c738/https://sourceforge.net/p/sloppycell/git/ci/3ab7b40c5f76e88a7c442a46b2a9de16131b02bc/Removing duplicates of ddaskr directoryKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/3ab7b40c5f76e88a7c442a46b2a9de16131b02bc/https://sourceforge.net/p/sloppycell/git/ci/869f5a0ca3f433e0c58b841bea2525e8f5fbef04/Fixed various syntax/compiler errorsKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/869f5a0ca3f433e0c58b841bea2525e8f5fbef04/https://sourceforge.net/p/sloppycell/git/ci/658dfd319732a5d8b2f6f159c55e203715e1cd85/Attempt to post updated code to developmentKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/658dfd319732a5d8b2f6f159c55e203715e1cd85/https://sourceforge.net/p/sloppycell/git/ci/499de1f10cdd62d663b0520ed6070ce17fcdb615/Added new files and tweaked existing ones slightlyKeeyan S GhoreshiFri, 11 Aug 2017 17:48:11 -0000https://sourceforge.net/p/sloppycell/git/ci/499de1f10cdd62d663b0520ed6070ce17fcdb615/https://sourceforge.net/p/sloppycell/git/ci/83e43c826474eed47ad268f0983d8defad6ac5ed/Finished ensemble trajectory routine, completing all graphs for Tyson ExampleKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/83e43c826474eed47ad268f0983d8defad6ac5ed/https://sourceforge.net/p/sloppycell/git/ci/bfce001c61bee338502bed293a595304e4b92cea/Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into DevelopmentKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/bfce001c61bee338502bed293a595304e4b92cea/https://sourceforge.net/p/sloppycell/git/ci/bc156fbad0d68253823de6152a7cd12d16fe4c2e/Small changes for debugging and to show graphsKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/bc156fbad0d68253823de6152a7cd12d16fe4c2e/https://sourceforge.net/p/sloppycell/git/ci/f740429823ea9803b7f10b5b26be84629ea6904e/Added network creation handlingKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/f740429823ea9803b7f10b5b26be84629ea6904e/https://sourceforge.net/p/sloppycell/git/ci/a5e834bc2f70de509e5fa59c742ecdf317a0d38f/Small changes to ensure compatibility with jak-stat and autocorrelation graphing from cacheKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/a5e834bc2f70de509e5fa59c742ecdf317a0d38f/https://sourceforge.net/p/sloppycell/git/ci/9b804816c89c2c63ab2b0d386f1537144a3c0116/Created xml file to run specified example, recreates related reproduction .py file.Keeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/9b804816c89c2c63ab2b0d386f1537144a3c0116/https://sourceforge.net/p/sloppycell/git/ci/8a7442b349450816cd53a6c7995fd75350882e0a/Added a quick workaround to avoid .pyd file buildup in main directoryKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/8a7442b349450816cd53a6c7995fd75350882e0a/https://sourceforge.net/p/sloppycell/git/ci/0d40d476d26f1b0818796280b3114d4f6985226c/Added sophisticated trajectory calculation and graphing functionsKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/0d40d476d26f1b0818796280b3114d4f6985226c/https://sourceforge.net/p/sloppycell/git/ci/c7129950b67a2b9e61eea3f2493b92c104c15520/Example updates, added anvin's modelKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/c7129950b67a2b9e61eea3f2493b92c104c15520/https://sourceforge.net/p/sloppycell/git/ci/7306dc79c29ab2c64c52b5aa77c6d45b5d60446c/Some quick bug fixes and an override functionalityKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/7306dc79c29ab2c64c52b5aa77c6d45b5d60446c/https://sourceforge.net/p/sloppycell/git/ci/1e0f55bd1fdff3297b737f3bb3718e5517573b26/Updates to example Scell files for new Optimization routineKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/1e0f55bd1fdff3297b737f3bb3718e5517573b26/https://sourceforge.net/p/sloppycell/git/ci/f71c92cec38c3da74dbb0c1a20bef330dc6af74c/Fixed mysterious bug related to failure to import c modulesKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/f71c92cec38c3da74dbb0c1a20bef330dc6af74c/https://sourceforge.net/p/sloppycell/git/ci/2088249cefd3ec4f887cf63e287061e22399f0ba/Added piecewise dynamics testingKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/2088249cefd3ec4f887cf63e287061e22399f0ba/https://sourceforge.net/p/sloppycell/git/ci/eb51dce9312fcb2add4000b87f4f9b4af6293611/Redid optimization routine and added a "replace" option to overwrite cacheKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/eb51dce9312fcb2add4000b87f4f9b4af6293611/https://sourceforge.net/p/sloppycell/git/ci/2da0e90aaf5a6b031132b704080594bd632e81ea/Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into DevelopmentKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/2da0e90aaf5a6b031132b704080594bd632e81ea/https://sourceforge.net/p/sloppycell/git/ci/73d1e29cc1a2935df4457007b0c25eba18c3a298/Updated to include network creationKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/73d1e29cc1a2935df4457007b0c25eba18c3a298/https://sourceforge.net/p/sloppycell/git/ci/fb66b6994f3ff3e176b1b3ac9782ec370658a3d9/Finished up most examples, left out ones that are too similar to other examples and ones that are too complicated to be done with the current frameworkKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/fb66b6994f3ff3e176b1b3ac9782ec370658a3d9/https://sourceforge.net/p/sloppycell/git/ci/4baccee2108e9df550e0ff071b4f30ac1b4d13af/Modified files to work with new test construction featuresKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/4baccee2108e9df550e0ff071b4f30ac1b4d13af/https://sourceforge.net/p/sloppycell/git/ci/16704c6f1de3471fc8d8331dd51a68d90685a708/Fixed mysterious residual adding bug & added Hessian routineKeeyan S GhoreshiFri, 11 Aug 2017 17:48:10 -0000https://sourceforge.net/p/sloppycell/git/ci/16704c6f1de3471fc8d8331dd51a68d90685a708/https://sourceforge.net/p/sloppycell/git/ci/d0ab0d7f997ed9dcbe065403d1517716be93df3d/Fix typo bugRyan GutenkunstFri, 23 Jun 2017 19:18:20 -0000https://sourceforge.net/p/sloppycell/git/ci/d0ab0d7f997ed9dcbe065403d1517716be93df3d/https://sourceforge.net/p/sloppycell/git/ci/7024cecef5d61379b8e278fa41c4794e7c2cf7a5/Fix careless bug in SBMLInterfaceRyan GutenkunstFri, 23 Jun 2017 19:13:07 -0000https://sourceforge.net/p/sloppycell/git/ci/7024cecef5d61379b8e278fa41c4794e7c2cf7a5/https://sourceforge.net/p/sloppycell/git/ci/330c7fcea276fff8fea84ff6ad668faaa43ee839/Protect atexit removal of build directory from empty directory issueRyan GutenkunstFri, 23 Jun 2017 19:13:07 -0000https://sourceforge.net/p/sloppycell/git/ci/330c7fcea276fff8fea84ff6ad668faaa43ee839/https://sourceforge.net/p/sloppycell/git/ci/6493c687948f418b4462bd68aa455afa491cbf9c/Delay remove of build directory until python session closes. This was causing mysterious problems with compilation.Ryan GutenkunstFri, 23 Jun 2017 00:11:54 -0000https://sourceforge.net/p/sloppycell/git/ci/6493c687948f418b4462bd68aa455afa491cbf9c/https://sourceforge.net/p/sloppycell/git/ci/628302fa6bb31764a1969468b70550606802a1c4/More complete conversion of SBML formula to Python syntaxRyan GutenkunstFri, 23 Jun 2017 00:11:54 -0000https://sourceforge.net/p/sloppycell/git/ci/628302fa6bb31764a1969468b70550606802a1c4/https://sourceforge.net/p/sloppycell/git/ci/ab82983418c4c104e741c70b797057b9c424c647/Add basic test for piecewise in dynamical equationsRyan GutenkunstFri, 16 Jun 2017 18:58:51 -0000https://sourceforge.net/p/sloppycell/git/ci/ab82983418c4c104e741c70b797057b9c424c647/https://sourceforge.net/p/sloppycell/git/ci/77c093a4ee571d6d5eaa7b64100e7299e286febb/Add preliminary support for piecewise in equations. Note that this requires manually disabling derivative functions and C compilation. [net.disable_deriv_funcs(); net.compile(disable_c=True)]Ryan GutenkunstFri, 16 Jun 2017 18:35:40 -0000https://sourceforge.net/p/sloppycell/git/ci/77c093a4ee571d6d5eaa7b64100e7299e286febb/https://sourceforge.net/p/sloppycell/git/ci/22c625836a55c7d4197e64a2d54be48b08161125/More thorough cleanup of files from C compilationRyan GutenkunstFri, 16 Jun 2017 18:34:06 -0000https://sourceforge.net/p/sloppycell/git/ci/22c625836a55c7d4197e64a2d54be48b08161125/https://sourceforge.net/p/sloppycell/git/ci/4b17bc11649792d2759903e07daaeab1f34e8e54/Remove hiding of specific compiler warnings.Ryan GutenkunstFri, 16 Jun 2017 16:54:09 -0000https://sourceforge.net/p/sloppycell/git/ci/4b17bc11649792d2759903e07daaeab1f34e8e54/https://sourceforge.net/p/sloppycell/git/ci/b54950679d8353ffade3902db06ea541c164d0c0/Improve error reporting in run_distutilsRyan GutenkunstTue, 13 Jun 2017 20:54:49 -0000https://sourceforge.net/p/sloppycell/git/ci/b54950679d8353ffade3902db06ea541c164d0c0/https://sourceforge.net/p/sloppycell/git/ci/1090ebd0d3bfe387be754a25dc84142e813b10b7/Make alg_res, don't generated empty C declaration.Ryan GutenkunstFri, 09 Jun 2017 17:49:25 -0000https://sourceforge.net/p/sloppycell/git/ci/1090ebd0d3bfe387be754a25dc84142e813b10b7/https://sourceforge.net/p/sloppycell/git/ci/0d61ff422628853df5c87038c3cede5314067370/C89 compatibility for integrate_stochastic_tidbitRyan GutenkunstFri, 09 Jun 2017 17:49:25 -0000https://sourceforge.net/p/sloppycell/git/ci/0d61ff422628853df5c87038c3cede5314067370/https://sourceforge.net/p/sloppycell/git/ci/9ab907d46e38c554d280c1b8ca74151aba4ecebe/Fix error in test_Stochastic, by limiting seed range (which is still huge enough.)Ryan GutenkunstFri, 09 Jun 2017 17:49:25 -0000https://sourceforge.net/p/sloppycell/git/ci/9ab907d46e38c554d280c1b8ca74151aba4ecebe/https://sourceforge.net/p/sloppycell/git/ci/a6ea2ce35725541f91626a33eee3f9c4e8957c8e/Fix ddaskr_jac signature inconsitencyRyan GutenkunstFri, 09 Jun 2017 17:49:25 -0000https://sourceforge.net/p/sloppycell/git/ci/a6ea2ce35725541f91626a33eee3f9c4e8957c8e/https://sourceforge.net/p/sloppycell/git/ci/3bbc6456faae3a4cf1a769adc82a19eb0e6e0a9e/More C89 compatibilityRyan GutenkunstFri, 09 Jun 2017 17:49:25 -0000https://sourceforge.net/p/sloppycell/git/ci/3bbc6456faae3a4cf1a769adc82a19eb0e6e0a9e/https://sourceforge.net/p/sloppycell/git/ci/f8d6f00331f123f79a7d9f4e3ead0412fed84361/Ignore some visual c++ warnings, for clarityRyan GutenkunstFri, 09 Jun 2017 17:49:25 -0000https://sourceforge.net/p/sloppycell/git/ci/f8d6f00331f123f79a7d9f4e3ead0412fed84361/https://sourceforge.net/p/sloppycell/git/ci/cbac5a703459875fda2809f6bd5b13e2386aed72/Use binary file write, to get line endings proper on Windows.Ryan GutenkunstThu, 08 Jun 2017 23:58:14 -0000https://sourceforge.net/p/sloppycell/git/ci/cbac5a703459875fda2809f6bd5b13e2386aed72/https://sourceforge.net/p/sloppycell/git/ci/6971719a6cfca76545add7a2be81b5f59b655148/Typo fixRyan GutenkunstThu, 08 Jun 2017 23:02:00 -0000https://sourceforge.net/p/sloppycell/git/ci/6971719a6cfca76545add7a2be81b5f59b655148/https://sourceforge.net/p/sloppycell/git/ci/376b6bfdbf1803b9b6065bf54e03c21cd52cedaf/In dynamic C functions, declare all variables before any computations, because Visual C++ only supports C89.Ryan GutenkunstThu, 08 Jun 2017 23:00:22 -0000https://sourceforge.net/p/sloppycell/git/ci/376b6bfdbf1803b9b6065bf54e03c21cd52cedaf/https://sourceforge.net/p/sloppycell/git/ci/5f2f3ebfd0007d7879fb6ed4cdef3a93ad72b351/More line ending fixesRyan GutenkunstThu, 08 Jun 2017 22:49:08 -0000https://sourceforge.net/p/sloppycell/git/ci/5f2f3ebfd0007d7879fb6ed4cdef3a93ad72b351/https://sourceforge.net/p/sloppycell/git/ci/7742c804347fd54d6c4e0ca15b8c661a41bd2552/Network_mod, replace \n with os.linesepRyan GutenkunstThu, 08 Jun 2017 22:39:11 -0000https://sourceforge.net/p/sloppycell/git/ci/7742c804347fd54d6c4e0ca15b8c661a41bd2552/