https://sourceforge.net/p/prothink/bugs/2009-07-22T02:56:48ZRecent changes to bugs2009-07-22T02:56:48Z2009-07-22T02:56:48ZEric Whttps://sourceforge.net/u/eweissenstein/https://sourceforge.net79588fb9556f16b42a10089d6a8e10991fa54c49

<div class="markdown_content"><p>Start up Protein Think. Exit the program within a few seconds of starting it. The program freezes (becomes unresponsive and will not shut down).</p> <p>Relevant output below:</p> <p>/home/name/opt/protein_think-0.0.5-a/fah_mainframe.py:300: GtkDeprecationWarning: gtk.threads_enter is deprecated, use gtk.gdk.threads_enter instead<br /> gtk.threads_enter()<br /> Main frame update at Tue Jul 21 22:51:58 2009<br /> {'src': 'DATA', 'event': 'STARTUP'}<br /> Key Error: 'INDV_NAME'<br /> /home/name/opt/protein_think-0.0.5-a/fah_mainframe.py:343: GtkDeprecationWarning: gtk.threads_leave is deprecated, use gtk.gdk.threads_leave instead<br /> gtk.threads_leave()<br /> /home/name/opt/protein_think-0.0.5-a/fah_mainframe.py:354: GtkDeprecationWarning: gtk.threads_enter is deprecated, use gtk.gdk.threads_enter instead<br /> gtk.threads_enter()<br /> FAH Mainframe shutting down<br /> Model shutting down.<br /> LocalReader thread shutting down.<br /> Problem downloading stats from internet.<br /> stats not downloaded from internet.</p></div>

2009-01-04T18:15:02Z2009-01-04T18:15:02ZMichael Brownhttps://sourceforge.net/u/mwbrown42/https://sourceforge.net8f64732e2091debdd53edf83104a6fb9bc546b49

<div class="markdown_content"><p>I was happy to see this graphical protein tracker so I downloaded and installed on Ubuntu 8.10 (with all updates applied) according to the directions. When I run it, I get errors in the console and the GUI tabs have no protein tracking information. I hope you can track this down as I'd like to see a prettier version of my status. Let me know if you need more information.</p> <p>Here is the console output when I launch the app:<br /> mbrown@lt-slo-mbrown:~/protein_think$ python fahmain.py <br /> Exception in thread Thread-1:<br /> Traceback (most recent call last):<br /> File "/usr/lib/python2.5/threading.py", line 486, in __bootstrap_inner<br /> self.run()<br /> File "/home/mbrown/protein_think/fahmodel.py", line 129, in run<br /> self.query_unitinfo()<br /> File "/home/mbrown/protein_think/fahmodel.py", line 49, in query_unitinfo<br /> self.parse_unit_info(self.read_unit_info())<br /> File "/home/mbrown/protein_think/fahmodel.py", line 112, in parse_unit_info<br /> if string.strip(progress_info[1]) == '0':<br /> UnboundLocalError: local variable 'progress_info' referenced before assignment</p> <p>Downloading statistics from internet...<br /> /home/mbrown/protein_think/fah_mainframe.py:300: GtkDeprecationWarning: gtk.threads_enter is deprecated, use gtk.gdk.threads_enter instead<br /> gtk.threads_enter()<br /> Main frame update at Sun Jan 4 10:00:45 2009<br /> {'src': 'DATA', 'event': 'STARTUP'}<br /> Key Error: 'CURRENT_UNIT_PERCENTAGE'<br /> /home/mbrown/protein_think/fah_mainframe.py:343: GtkDeprecationWarning: gtk.threads_leave is deprecated, use gtk.gdk.threads_leave instead<br /> gtk.threads_leave()<br /> /home/mbrown/protein_think/fah_mainframe.py:354: GtkDeprecationWarning: gtk.threads_enter is deprecated, use gtk.gdk.threads_enter instead<br /> gtk.threads_enter()<br /> Latest stats written to file.<br /> info_list: ['36167', 'Hunt-Dis', '8316526', '52764', '307', '11702', '3', 'mwbrownibm', '419052', '2813', '36167', '']<br /> Main frame update at Sun Jan 4 10:00:45 2009<br /> {'keys': ['TEAM_CREDITS', 'INDV_RANK', 'RANK_ON_TEAM', 'TEAM_RANK', 'TEAM_NUM', 'INDV_WUS', 'TEAM_WUS', 'INDV_NAME', 'TEAM_NAME', 'INDV_CREDITS'], 'src': 'DATA', 'event': 'VALUES_CHANGED'}<br /> Key Error: 'CURRENT_UNIT_PERCENTAGE'</p> <p>Here is the current contents of the stats.txt file:<br /> mbrown@lt-slo-mbrown:~/protein_think/.stats$ cat stats.txt <br /> 36167<br /> Hunt-Dis<br /> 8316526<br /> 52764<br /> 307<br /> 11702<br /> 3<br /> mwbrownibm<br /> 419052<br /> 2813<br /> 36167</p> <p>Here is the current console output of the running FAH application:<br /> mbrown@lt-slo-mbrown:~/opt/foldingathome/1$ ./fah6</p> <p>Note: Please read the license agreement (fah6 -license). Further <br /> use of this software requires that you have read and accepted this agreement.</p> <p>--- Opening Log file [January 4 04:14:21] </p> <p># Linux Console Edition #######################################################<br /> ###############################################################################</p> <p>Folding@Home Client Version 6.02</p> <p><a href="http://folding.stanford.edu" rel="nofollow">http://folding.stanford.edu</a></p> <p>###############################################################################<br /> ###############################################################################</p> <p>Launch directory: /home/mbrown/opt/foldingathome/1<br /> Executable: ./fah6</p> <p>[04:14:21] - Ask before connecting: No<br /> [04:14:21] - User name: mwbrownibm (Team 36167)<br /> [04:14:21] - User ID: 3A77268E578CB749<br /> [04:14:21] - Machine ID: 1<br /> [04:14:21] <br /> [04:14:22] Loaded queue successfully.<br /> [04:14:22] <br /> [04:14:22] + Processing work unit<br /> [04:14:22] Core required: FahCore_a0.exe<br /> [04:14:22] Core found.<br /> [04:14:22] Working on Unit 01 [January 4 04:14:22]<br /> [04:14:22] + Working ...<br /> [04:14:22] <br /> [04:14:22] *------------------------------*<br /> [04:14:22] Folding@Home Gromacs 3.3 Core<br /> [04:14:22] Version 1.92 (April 17. 2007)<br /> [04:14:22] <br /> [04:14:22] Preparing to commence simulation<br /> [04:14:22] - Ensuring status. Please wait.<br /> [04:14:39] - Looking at optimizations...<br /> [04:14:39] - Working with standard loops on this execution.<br /> [04:14:39] - Previous termination of core was improper.<br /> [04:14:39] - Files status OK<br /> [04:14:40] - Expanded 960765 -&gt; 6252409 (decompressed 650.7 percent)<br /> [04:14:40] <br /> [04:14:40] Project: 786 (Run 25, Clone 44, Gen 0)<br /> [04:14:40] <br /> [04:14:40] Entering M.D.<br /> Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.<br /> Copyright (c) 1991-2000, University of Groningen, The Netherlands.<br /> Copyright (c) 2001-2004, The GROMACS development team,<br /> check out <a href="http://www.gromacs.org" rel="nofollow">http://www.gromacs.org</a> for more information.</p> <p>This inclusion of Gromacs code in the Folding@Home Core is under<br /> a special license (see <a href="http://folding.stanford.edu/gromacs.html\" rel="nofollow">http://folding.stanford.edu/gromacs.html\</a>)<br /> specially granted to Stanford by the copyright holders. If you<br /> are interested in using Gromacs, visit www.gromacs.org where<br /> you can download a free version of Gromacs under<br /> the terms of the GNU General Public License (GPL) as published<br /> by the Free Software Foundation; either version 2 of the License,<br /> or (at your option) any later version.</p> <p>No option -tpi<br /> (single precision)<br /> [04:15:03] (Starting from checkpoint)<br /> [04:15:03] Protein: Mini chaperonin<br /> [04:15:03] Writing local files<br /> starting mdrun 'Mini chaperonin'<br /> 500000 steps, 1000.0 ps.</p> <p>[04:15:03] Completed 477554 out of 500000 steps (95%)<br /> [06:15:29] Writing local files<br /> [06:15:29] Completed 480000 out of 500000 steps (96 percent)<br /> [10:21:46] Writing local files<br /> [10:21:46] Completed 485000 out of 500000 steps (97 percent)<br /> [14:28:07] Writing local files<br /> [14:28:07] Completed 490000 out of 500000 steps (98 percent)</p></div>

2006-10-19T00:57:13Z2006-10-19T00:57:13Zhttps://sourceforge.nethttps://sourceforge.net18d95470a0a02c6ee015549e70620d81f9899654

<div class="markdown_content"><p>If you only hit enter when asked for F@H username,<br /> problems will follow.</p> <p>(error in console and empty tabs in prog)</p></div>