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<feed xml:lang="en" xmlns="http://www.w3.org/2005/Atom"><title>Recent changes to 5: Missing RC Flag</title><link href="https://sourceforge.net/p/mummer/bugs/5/" rel="alternate"/><link href="https://sourceforge.net/p/mummer/bugs/5/feed.atom" rel="self"/><id>https://sourceforge.net/p/mummer/bugs/5/</id><updated>2006-06-13T21:42:49Z</updated><subtitle>Recent changes to 5: Missing RC Flag</subtitle><entry><title>Missing RC Flag</title><link href="https://sourceforge.net/p/mummer/bugs/5/" rel="alternate"/><published>2006-06-13T21:42:49Z</published><updated>2006-06-13T21:42:49Z</updated><author><name>Michael Schatz</name><uri>https://sourceforge.net/u/mcschatz/</uri></author><id>https://sourceforge.netd8bec6aea2ea3319f4fb0c7af97c882b68a604b1</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;The reverse complement flag (*) is not displayed when&lt;br /&gt;
flipping a single query contig with --layout.&lt;/p&gt;
&lt;p&gt;For example, align a sequence to the reverse of itself.&lt;br /&gt;
Displaying the alignment with mummerplot shows the rc&lt;br /&gt;
alignment. Displaying the alignment with mummerplot&lt;br /&gt;
--layout shows a forward alignmnent, but no RC flag (*)&lt;br /&gt;
next to the sequence name.&lt;/p&gt;&lt;/div&gt;</summary></entry></feed>