Fails to compile
RNA-Seq driven gene finding incorporating ambiguous reads
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#1 Fails to compile
Hi,
I tried to get the code and to compile it but I have an error on geneFinder/SamParser.java.
It makes use of CigarParser but:
- there is no import .... in the file
- I do not find any CigarParser class declaration in provided code nor external library
If this is a library dependance, could you specify what/where is this library available ?
By the way, you do not provide any build file to compile. I created one to ease it, if you have none, I can give you my ant build file, but I suspect you already have one somewhere. It would be fine to provide it with code.
Thanks
Hi,
thank you for pointing out the missing class CigarParser, accidently it was not updated in the svn.
I did a new commit and now the class is integrated.
I apologize for the inconvience!
Concerning your second question: I added the manifest and a shell script that shall aid the compile process. Please note that compiling from source in this way is only possible when the cplex libraries are installed on your system.
Best,
Franziska Zickmann