https://sourceforge.net/p/biop/activity/Recent activity for biOPenTue, 20 Aug 2019 12:07:34 -0000https://sourceforge.net/p/biop/git/ci/9da737b98195c67822d57ef9e61cff582fd858cb/Initial version 0.1 of SNPDIST example program sourcephiTue, 20 Aug 2019 12:07:34 -0000https://sourceforge.net/p/biop/git/ci/9da737b98195c67822d57ef9e61cff582fd858cb/https://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/examples/Snpdist-v0-1_example_compiled-win64_2018-07-24.zip/downloadbiOPTue, 20 Aug 2019 12:05:03 -0000https://sourceforge.net/projects/biop/files/examples/Snpdist-v0-1_example_compiled-win64_2018-07-24.zip/downloadhttps://sourceforge.net/p/biop/git/ci/c85eb23004d799b30ef8c59e9dabd002cae8dd7b/bioGbk 0.0.0001 - Genbank flatfile reader, first (limited) versionphiTue, 24 Jul 2018 12:20:38 -0000https://sourceforge.net/p/biop/git/ci/c85eb23004d799b30ef8c59e9dabd002cae8dd7b/https://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/biop4r_compiled/2018-07-23/biOP4R64_beta_compiled_v0-04-0009_2018-07-23_WinLinux.zip/downloadbiOPMon, 23 Jul 2018 12:03:04 -0000https://sourceforge.net/projects/biop/files/biop4r_compiled/2018-07-23/biOP4R64_beta_compiled_v0-04-0009_2018-07-23_WinLinux.zip/downloadhttps://sourceforge.net/p/biop/git/ci/af7fef83163dbb07fbee8d2a283251f4f60084f3/1.2.0003 - Minor changes enhancements in ExportVcf2BinBiallelic; Changed DefaultVcfmergeOutUnk[Ref/Alt]AlleleSymb defaultsphiMon, 23 Jul 2018 11:55:33 -0000https://sourceforge.net/p/biop/git/ci/af7fef83163dbb07fbee8d2a283251f4f60084f3/https://sourceforge.net/p/biop/git/ci/fcee481d49285f2c3388cf75da319a378abb7cb4/bioQSeqs 2.0.0001 - Added .ListSeqsphiMon, 23 Jul 2018 11:55:33 -0000https://sourceforge.net/p/biop/git/ci/fcee481d49285f2c3388cf75da319a378abb7cb4/https://sourceforge.net/p/biop/git/ci/12f6b298232a43ee6ce426ec47baf3a9a933fc39/phiStruc 1.0.0002 - fixed serious bug in definition of ValNBitMasksphiMon, 23 Jul 2018 11:55:33 -0000https://sourceforge.net/p/biop/git/ci/12f6b298232a43ee6ce426ec47baf3a9a933fc39/https://sourceforge.net/p/biop/git/ci/36e5dea00d6e27d39f77bfd10165c0c2c70bc8f1/phiStr 3.0.0004 - added SubStr, StrRgn, SubStrEq, CvtADw2AStr, renamed CvtAStr2ADwphiMon, 23 Jul 2018 11:55:33 -0000https://sourceforge.net/p/biop/git/ci/36e5dea00d6e27d39f77bfd10165c0c2c70bc8f1/https://sourceforge.net/p/biop/git/ci/e8e69939577f2c3c13c47d5a4d296c2a779ce648/bioSeq 2.0.0006 - Added DEFINE_LOWERCASE_NUCLEOTIDES define to allow sequence manipulations with lower-case lettersphiMon, 23 Jul 2018 11:55:33 -0000https://sourceforge.net/p/biop/git/ci/e8e69939577f2c3c13c47d5a4d296c2a779ce648/https://sourceforge.net/p/biop/git/ci/6dd2ff94609e4931026c98fc170849c2c16ef5b9/bioVCF 1.2.0014 - Added HasUnkRefAllele, OverlapsNextVariants, GetMeanChromCoveragePerInd; changes to definitions and IsPolymorphic and GetSampleAllelesphiMon, 23 Jul 2018 11:55:33 -0000https://sourceforge.net/p/biop/git/ci/6dd2ff94609e4931026c98fc170849c2c16ef5b9/https://sourceforge.net/p/biop/git/ci/50f187da4327c47403535ff8ddb4a3979ba48648/phiBase 4.0.0012 - mostly fixes for Linux64/FPCphiMon, 23 Jul 2018 11:55:33 -0000https://sourceforge.net/p/biop/git/ci/50f187da4327c47403535ff8ddb4a3979ba48648/https://sourceforge.net/p/biop/git/ci/5508c20782adfd4db0e9530e82d91e2c16eb2d0b/bioTXcf 1.2.0002 - bug fix in ExportVcf2BinBiallelicphiFri, 24 Nov 2017 13:11:18 -0000https://sourceforge.net/p/biop/git/ci/5508c20782adfd4db0e9530e82d91e2c16eb2d0b/https://sourceforge.net/p/biop/git/ci/854ad9e4daf1ad0c7d4c53fdd22da99619cafd0a/bioVCF 1.2.0013 - Changes/fixes to .GetChromAlleles et al.phiMon, 20 Nov 2017 08:39:16 -0000https://sourceforge.net/p/biop/git/ci/854ad9e4daf1ad0c7d4c53fdd22da99619cafd0a/https://sourceforge.net/p/biop/git/ci/e5a369ad90c03487bbccd6df6b13350a5dd1d650/phiBase 4.0.0010 - Fixed bugs in CpyMem_ERMSB/RepValB_ERMSBphiFri, 17 Nov 2017 07:53:00 -0000https://sourceforge.net/p/biop/git/ci/e5a369ad90c03487bbccd6df6b13350a5dd1d650/https://sourceforge.net/p/biop/git/ci/07ebd71c60bb3e6e461ef071e572b95e341b7b58/phiBase 4.0.0009 - Fixed AscD x64 bug; Added ERMSB code (CpyMem, RepValB, CPUID feature detection)phiThu, 16 Nov 2017 21:48:12 -0000https://sourceforge.net/p/biop/git/ci/07ebd71c60bb3e6e461ef071e572b95e341b7b58/https://sourceforge.net/p/biop/git/ci/8ab3d20b33da482b2ee588ac1959f1802bcf864f/Added TMMTF.LoadToAStr convenience function; removed .CreateWithDecoderphiThu, 16 Nov 2017 21:48:12 -0000https://sourceforge.net/p/biop/git/ci/8ab3d20b33da482b2ee588ac1959f1802bcf864f/https://sourceforge.net/p/biop/git/ci/161d3ff45e37e46a40f8cfe9fa396651fdae975d/Added TTsvFile aliasphiThu, 16 Nov 2017 21:48:12 -0000https://sourceforge.net/p/biop/git/ci/161d3ff45e37e46a40f8cfe9fa396651fdae975d/https://sourceforge.net/p/biop/git/ci/062d2b812e33a5977c551836300e426dcd6c55e5/Improved ConcatAStr, fixed bug in ScnChsExFphiThu, 16 Nov 2017 21:48:12 -0000https://sourceforge.net/p/biop/git/ci/062d2b812e33a5977c551836300e426dcd6c55e5/https://sourceforge.net/p/biop/git/ci/12f0aa27b71891d2c92f1744d58763ad2f9208bc/bioFastAQ 1.0.0001 - Added TFastaFile.GetSeqIDByNameStart etc.phiThu, 16 Nov 2017 21:48:12 -0000https://sourceforge.net/p/biop/git/ci/12f0aa27b71891d2c92f1744d58763ad2f9208bc/https://sourceforge.net/p/biop/git/ci/293190c44ceaba8fd4de80e29af94852b7fe5cad/bioGFF3 1.0.0001 - Added .LoadGFFfromAStrphiThu, 16 Nov 2017 21:48:12 -0000https://sourceforge.net/p/biop/git/ci/293190c44ceaba8fd4de80e29af94852b7fe5cad/https://sourceforge.net/p/biop/git/ci/dceae0e95c1290035bb31ba37294bc419bd9f863/bioBGZF 2.0.0005 - minor bug fixphiThu, 24 Aug 2017 18:56:21 -0000https://sourceforge.net/p/biop/git/ci/dceae0e95c1290035bb31ba37294bc419bd9f863/https://sourceforge.net/p/biop/git/ci/4250de9f49047fc433401ce84142bcc85b0fd22d/bioVCF 1.2.0009 - Added GetChromVariants, GetChromAlleles and GetSampleAlleles, and minor fixesphiThu, 24 Aug 2017 18:56:21 -0000https://sourceforge.net/p/biop/git/ci/4250de9f49047fc433401ce84142bcc85b0fd22d/https://sourceforge.net/p/biop/git/ci/f9da770fd05b935812cbeca451fd97965bbb4823/bioBGZF 2.0.0004 - added convenience function .MakeZDecoderphiThu, 27 Jul 2017 06:58:41 -0000https://sourceforge.net/p/biop/git/ci/f9da770fd05b935812cbeca451fd97965bbb4823/https://sourceforge.net/p/biop/git/ci/1a362615113070691cce71493809089b146427f3/uTExtendedX87 - added single space that makes FPC happyphiThu, 27 Jul 2017 06:58:41 -0000https://sourceforge.net/p/biop/git/ci/1a362615113070691cce71493809089b146427f3/https://sourceforge.net/p/biop/git/ci/118a3286b5a3a6c1ba2421f4a6492e5b72ecfd67/phiMMF 1.1.0016 - Fixed .NextValidViewOffset, small changes for LinuxphiThu, 27 Jul 2017 06:58:41 -0000https://sourceforge.net/p/biop/git/ci/118a3286b5a3a6c1ba2421f4a6492e5b72ecfd67/https://sourceforge.net/p/biop/git/ci/bec95d4e55b7528439cbc1ea17c8138369be42f3/phiStruc 1.0.0001 - made AsByte the default property of TMemArrayphiThu, 27 Jul 2017 06:58:41 -0000https://sourceforge.net/p/biop/git/ci/bec95d4e55b7528439cbc1ea17c8138369be42f3/https://sourceforge.net/p/biop/git/ci/1343830c22ccc68fd5eb60175778f12e115df3b6/phiBase 4.0.0008 - some small new definitions; small fixes, esp. w.r.t. stack allocation functionsphiThu, 27 Jul 2017 06:58:41 -0000https://sourceforge.net/p/biop/git/ci/1343830c22ccc68fd5eb60175778f12e115df3b6/https://sourceforge.net/p/biop/git/ci/984e191892f6e3f0d0742f1580d45ac2de2e4fe1/bioDelphi2C 1.0.0008 - added vcfCloseFilephiThu, 27 Jul 2017 06:58:41 -0000https://sourceforge.net/p/biop/git/ci/984e191892f6e3f0d0742f1580d45ac2de2e4fe1/https://sourceforge.net/p/biop/git/ci/fd647692cffb86b3d6d31ecbb76ee68f781fa04e/bioDelphi2R 1.0.0007 - added bdVcfCloseFilephiThu, 27 Jul 2017 06:58:41 -0000https://sourceforge.net/p/biop/git/ci/fd647692cffb86b3d6d31ecbb76ee68f781fa04e/https://sourceforge.net/p/biop/git/ci/12e772d44c905b3e3bca540b34902cdc67e8d63c/bioDelphi2R 1.0.0006 - bug fix for a nasty pointer issuephiWed, 12 Jul 2017 12:16:58 -0000https://sourceforge.net/p/biop/git/ci/12e772d44c905b3e3bca540b34902cdc67e8d63c/https://sourceforge.net/p/biop/git/ci/f7683749f133e533a319df3309b43de16ef87ae4/RPascalLight 2017-07-11 - added NA constants/variablesphiTue, 11 Jul 2017 09:11:22 -0000https://sourceforge.net/p/biop/git/ci/f7683749f133e533a319df3309b43de16ef87ae4/https://sourceforge.net/p/biop/git/ci/f64fefe9c409ccc18993d9487dd6e3e7ac26a91c/phiBase 4.0.0006; bug fixes to Linux64's ProcFastCall; new Get/FreeStackMem and SetPStrStack among othersphiTue, 11 Jul 2017 09:11:22 -0000https://sourceforge.net/p/biop/git/ci/f64fefe9c409ccc18993d9487dd6e3e7ac26a91c/https://sourceforge.net/p/biop/git/ci/8e6a6b9678bf751106a6738e03235060ac1f4b18/bioDelphi2R 1.0.0005 - a few new functions, changes to bdVcfMergephiTue, 11 Jul 2017 09:11:22 -0000https://sourceforge.net/p/biop/git/ci/8e6a6b9678bf751106a6738e03235060ac1f4b18/https://sourceforge.net/p/biop/git/ci/ec6c03318cd1c1c5bdcce267957c4518dc405888/bioTXcf 1.2.0001; bug fix for vcfMerge under DCC64 v32.0phiTue, 11 Jul 2017 09:11:22 -0000https://sourceforge.net/p/biop/git/ci/ec6c03318cd1c1c5bdcce267957c4518dc405888/https://sourceforge.net/p/biop/git/ci/ff7e47020a15829557aa57586ff92e8ededc054c/phiFileIO 1.2.0002; added Linux version for PeekFileStartphiTue, 11 Jul 2017 09:11:22 -0000https://sourceforge.net/p/biop/git/ci/ff7e47020a15829557aa57586ff92e8ededc054c/https://sourceforge.net/p/biop/git/ci/29a4a718f56c615f3756f6fc2e416048dfe0eece/biOP4R.dpr 2017-04-28phiWed, 05 Jul 2017 09:56:54 -0000https://sourceforge.net/p/biop/git/ci/29a4a718f56c615f3756f6fc2e416048dfe0eece/https://sourceforge.net/p/biop/git/ci/bdb196fc57d02db626b9bb8cf4a381f29de6d9fd/bioDelphi2C 1.0.0007 - various small additions and bug fixesphiWed, 05 Jul 2017 09:52:26 -0000https://sourceforge.net/p/biop/git/ci/bdb196fc57d02db626b9bb8cf4a381f29de6d9fd/https://sourceforge.net/p/biop/git/ci/74ea6548195b25f6373a9d0cad21952af95f9476/bioTXcf 1.2.0000 - BREAKING CHANGE in vcfMerge implementation; bug fixes, esp. re. GVCF mergingphiWed, 05 Jul 2017 09:52:26 -0000https://sourceforge.net/p/biop/git/ci/74ea6548195b25f6373a9d0cad21952af95f9476/https://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/biop4r_compiled/2017-05-04/biop4r_beta_compiled%252BR_0-04-7_2017-05-04_Win.zip/downloadbiOPWed, 05 Jul 2017 09:49:02 -0000https://sourceforge.net/projects/biop/files/biop4r_compiled/2017-05-04/biop4r_beta_compiled%2BR_0-04-7_2017-05-04_Win.zip/downloadhttps://sourceforge.net/p/biop/git/ci/e140991ff23b024436ef1ee859b4f10d5cac743c/phiStr 3.0.0001 - added TrcStrAtDelim[Ex]RphiTue, 04 Jul 2017 12:59:37 -0000https://sourceforge.net/p/biop/git/ci/e140991ff23b024436ef1ee859b4f10d5cac743c/https://sourceforge.net/p/biop/git/ci/46d78f4878cee339879b0ea34ee07ac6622806d9/phiBase 4.0.0004; new ifelse version, 2nd tryphiWed, 21 Jun 2017 17:10:17 -0000https://sourceforge.net/p/biop/git/ci/46d78f4878cee339879b0ea34ee07ac6622806d9/https://sourceforge.net/p/biop/git/ci/9a1a61a38ccf6be2bf556fed0b8c83293c42d6f6/Added riMkCharLenphiWed, 21 Jun 2017 17:04:22 -0000https://sourceforge.net/p/biop/git/ci/9a1a61a38ccf6be2bf556fed0b8c83293c42d6f6/https://sourceforge.net/p/biop/git/ci/c3558ef291d25236add64b68328ac7fbea326f27/bioSeq 2.0.0005; minor IFDEF changesphiWed, 21 Jun 2017 17:04:22 -0000https://sourceforge.net/p/biop/git/ci/c3558ef291d25236add64b68328ac7fbea326f27/https://sourceforge.net/p/biop/git/ci/f6709837e5074073f48aee04e125342ea9978dac/uTExtendedX87 0.0006: Compiles on FPC3/Win64 + minor changesphiWed, 21 Jun 2017 17:04:22 -0000https://sourceforge.net/p/biop/git/ci/f6709837e5074073f48aee04e125342ea9978dac/https://sourceforge.net/p/biop/git/ci/14135dea08344ccb6038e844706498bcb4ec5a05/phiBase 4.0.0004; new ifelse versionphiWed, 21 Jun 2017 16:49:10 -0000https://sourceforge.net/p/biop/git/ci/14135dea08344ccb6038e844706498bcb4ec5a05/https://sourceforge.net/p/biop/git/ci/86f97917d6d2cefc76de04f707ffe7d60e11ee21/phiMMF 1.1.015; minor definition additionphiWed, 21 Jun 2017 16:49:10 -0000https://sourceforge.net/p/biop/git/ci/86f97917d6d2cefc76de04f707ffe7d60e11ee21/https://sourceforge.net/p/biop/git/ci/74cc42bc5e908f4e44c450d80af5651e667d353d/phiFileIO update 1.2.0001; changes to PeekFileStartphiWed, 21 Jun 2017 16:25:05 -0000https://sourceforge.net/p/biop/git/ci/74cc42bc5e908f4e44c450d80af5651e667d353d/https://sourceforge.net/p/biop/git/ci/01ffeb8874a5e3012c7ce743f9d8296c64bbe6ef/bioHPUX update 1.0.0001; added method UnloadFilephiWed, 21 Jun 2017 16:20:17 -0000https://sourceforge.net/p/biop/git/ci/01ffeb8874a5e3012c7ce743f9d8296c64bbe6ef/https://sourceforge.net/p/biop/git/ci/c207369c2bb9572d637f2da386885ae7dee1977b/Updated to bioVCF 1.2.0006phiWed, 21 Jun 2017 16:15:34 -0000https://sourceforge.net/p/biop/git/ci/c207369c2bb9572d637f2da386885ae7dee1977b/https://sourceforge.net/p/biop/git/ci/1b530c21e335c11d55fa9c826da099658f38aa6a/Initial commitphiThu, 13 Apr 2017 09:03:18 -0000https://sourceforge.net/p/biop/git/ci/1b530c21e335c11d55fa9c826da099658f38aa6a/https://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/biop4r_compiled/2017-04-07/biop4r_beta_compiled%252BR_0-04_2017-04-07_Win.zip/downloadbiOPThu, 13 Apr 2017 08:42:02 -0000https://sourceforge.net/projects/biop/files/biop4r_compiled/2017-04-07/biop4r_beta_compiled%2BR_0-04_2017-04-07_Win.zip/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/biop4r_compiled/2014-10-20/biop4r_2014-10-20.zip/downloadbiOPThu, 13 Apr 2017 08:41:02 -0000https://sourceforge.net/projects/biop/files/biop4r_compiled/2014-10-20/biop4r_2014-10-20.zip/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioSAM.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioSAM.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioAlgmt.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioAlgmt.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioABIF.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioABIF.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/phiMMTF.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/phiMMTF.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioTXcf.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioTXcf.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioDelphi2R.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioDelphi2R.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioSeq.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioSeq.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/phiBase.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/phiBase.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/RPascalLight.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/RPascalLight.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioHPUX.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioHPUX.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioBAM.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioBAM.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioVCF.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioVCF.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioGFF3.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioGFF3.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/phiCSV.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/phiCSV.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioTNgs.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioTNgs.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/bioTFaq.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 -0000https://sourceforge.net/projects/biop/files/src/src_2017-04-07/bioTFaq.pas/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/biop/files/src/src_2017-04-07/phiStr.pas/downloadbiOPThu, 13 Apr 2017 08:38:02 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