Search Results for "sequence scaffold, java"
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Showing 41 open source projects for "sequence scaffold, java"
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Bitdefender Ultimate Small Business SecurityGet exceptional protection against all digital threats for your business and employees.
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Smarter Packing Decisions for Retailers and 3PLsPaccurate is the only patented cartonization solution that optimizes for transportation costs directly. So you can have the right boxes, and control how they're packed.
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Serverless Java container
A Java wrapper to run Spring, Spring Boot, Jersey, and other apps
...This means you can keep much of your familiar Java-based architecture (controllers, filters, dependency injection) and deploy it in a serverless environment without rewriting everything from scratch. The project supports multiple framework flavors and versions, provides archetypes (Maven/Gradle) to scaffold applications, and maintains separate branches for legacy (Java EE/1.x) and modern (Jakarta EE/2.x+) ecosystems. -
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The Ballerina programming language
The Ballerina Programming Language
Ballerina is an open-source programming language for the cloud that makes it easier to use, combine, and create network services. Network primitives in the language make it simpler to write services and run them in the cloud. Structural types with support for openness are used both for static typing within a program and for describing service interfaces. Type-safe, declarative processing of JSON, XML, and tabular data with language-integrated queries. Explicit error handling, static types,... -
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Kamon Telemetry
Distributed Tracing, Metrics and Context Propagation for applications
Kamon Telemetry is a set of libraries for instrumenting applications running on the JVM. With Kamon Telemetry you can collect metrics, propagate context across threads and services, and get distributed traces automatically. The best way to get started is by following our installation guides and taking it from there. Have fun with Kamon. Monitor your backend applications, fix performance issues, and get alerted when problems happen. All without being a monitoring expert. Everybody starts... -
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JSchemePlus
An hack of Jscheme with a lot of enhancements and additional features.
...It allows to redistribute a script in an executable JAR file of only ~40K and implements all of R4RS with a lot of additional functions, like: (execute command) (random) (sequence from up-to step) (split list element) (string-split string sub-string) (read-all-from-file file) (write-to-file file data) (file-size file) etc... For the complete list read the HELP file or type (help). JSchemePlus needs only the Java Virtual Machine (version 6 or higher) that, in the case, is very easy to download and install. -
Effortlessly manage macOS, iOS, iPadOS and tvOS devices across multiple clients and locations.Addigy solutions accelerate Apple adoption in any environment.
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flom
Free Lock Manager
...Shell commands, scripts and custom programs can be synchronized inside a single system or in a network of IP connected systems. FLoM supports different types of abstract resources: simple, numeric, set, hierarchical and transactional sequence. libflom, the library shipped with FLoM, allows you to develop your own application using a simple C, C++, Java, Perl, PHP or Python client API. SSL/TLS security for network communication, X.509 certificates for peer to peer mutual authentication. -
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SequenceDiagram
SequencePlugin for IntelliJ IDEA
Sequence Diagram is a tool to generate simple sequence diagrams (UML) from Java, kotlin, scala(Beta), and Groovy (limited) code. -
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shadow-cljs
ClojureScript compilation made easy
shadow-cljs is a ClojureScript build tool designed with simplicity and modern JavaScript interoperability in mind. Distributed via npm, it handles compilation, hot-reloading, module targets (ESM, Node, Browser), and tight integration with JS tooling. Creating your project can be done quickly using the npx create-cljs-project utility. npx is part of npm and lets us run utility scripts quickly without worrying about installing them first. The installer will create a basic project scaffold and... -
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A fast and reliable tool, written in Java 8, for generating professional UML sequence diagrams from text. Supports actors, con-/destructors, threads, broadcasts, notes, and fragments. Can serve as a Javadoc taglet. Exports PDF, (E)PS, SVG, PNG, ... The source code is hosted at http://github.com/sdedit/sdedit
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BeigeUML
UML diagram editor
BeigeUML is an UML diagram editor. It has two user interfaces - ordinary desktop SWING and Android. Features: 1. Supports UML 2.4.1 compliant class diagram, package diagram, object diagram, sequence diagram and use case diagram. 2. It generates UML class diagram from Java source. 3. It's a doclet that generates standard Javadoc with UML class diagram. This application you can download from Central Maven Repository: https://search.maven.org/#search%7Cga%7C1%7Cg%3A%22org.beigesoft%22. There beige-uml-swing-[VERSION]-jar-with-dependencies.jar is Swing application and beige-uml-android-[VERSION].apk is Android application. ... -
Parasoft: Automated Testing to Deliver Superior Quality SoftwareParasoft helps organizations continuously deliver high-quality software with its AI-powered software testing platform and automated test solutions. Supporting the embedded, enterprise, and IoT markets, Parasoft’s proven technologies reduce the time, effort, and cost of delivering secure, reliable, and compliant software by integrating everything from deep code analysis and unit testing to web UI and API testing, plus service virtualization and complete code coverage, into the delivery pipeline. Bringing all this together, Parasoft’s award-winning reporting and analytics dashboard provides a centralized view of quality, enabling organizations to deliver with confidence and succeed in today’s most strategic ecosystems and development initiatives—security, safety-critical, Agile, DevOps, and continuous testing.
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Java provides the concurrent library that simplifies concurrent programming, but this is hard to learn and visualize. This project is a series of animations each illustrating the coding and usage of a component in the java concurrent library.
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Java bio-informatics library to analyze and convert genomic sequence and assembly data. This library was created and used by the J. Craig Venter Institute (JCVI)
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OovAide
C++, Java IDE with auto class, sequence, zone, dependency, diagrams
The OovAide project used to be named oovcde. Searching the web will bring up more information about oovcde at this time. The OovAide project is a C++ or Java analysis IDE for Windows or Linux with an automated multi-tasking build system, cross compiler support, an analysis tool based on CLang that creates UML class, component, sequence as well as zone and portion diagrams from C++ or Java source, static analysis and test coverage. The diagrams allow navigation through the source code, and can be edited manually and saved as .SVG files. ... -
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This tool helps you to reverse engineer UML Sequence Diagram for your java program at runtime. It works well with both complex java programs (that have multiple threads) and J2EE applications deployed on Application Servers.
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The Panini Language
Better Modularity, Better Concurrency
This project makes the compiler and tools for the Panini language available. A central goal of the Panini language is to make concurrent programming easier and less error-prone. The main new feature in Panini is called a capsule. A capsule is like an actor but better because it largely retains the traditional approach for reasoning about programs as a sequence of operations, abstracts away all details of thread creation and locking, and supports fully-automatic compile-time analysis of... -
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MSCViewer
A tool for visualization and analysis of logs as sequence diagrams
MSCViewer is a tool intended for debugging of control flows in concurrent, distributed systems. The tool loads logs generated by various entities in the system and visualize a sequence diagram chart for events and interactions. The diagram is fully interactive: entity can be added/removed from the diagram and shuffled; events can be filtered, searched, highlighted and annotated with comments. MSCViewer features integration with a Python interpreter which allows writing Python scripts... -
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xorlisp
Bit level lambda continuations and nothing else - Queue automata
Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair. Continuations are nearly finished code and are represented as a... -
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DomainMath IDE
An open source gui frontend application for GNU Octave
DomainMath IDE is an open source GUI front-end application for GNU Octave -
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation please refer to the link below: https://sourceforge.net/p/ngsscaffolds/wiki/Documentation/ -
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Aspose for Hadoop
This project holds source code for Aspose for Hadoop project.
Aspose for Hadoop project enables Apache Hadoop / MapReduce developers to work with various binary file formats. The developers can create and convert binary sequence files into text sequence files. -
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(Diver is in the process of being moved to GitHub. Please find us at https://github.com/thechiselgroup/Diver. Support requests & messages sent here may never be seen.) Dynamic Interactive Views For Reverse Engineering. Div/er is a set of Eclipse Plugins that aid developers in understanding software. It uses dynamic analysis and reverse engineering to offer views and filters that aid comprehension and discovery.
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JAVA Program to Sequence Diagram Generator. This tool tries to help on analysing and understanding the behavior of the code when developping JAVA applications by generating the respective Sequence Diagram automatically at program execution.
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
...It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein interactions, gene expression, disease-causing probabilities, genomic context). GEPETTO is written in Java/Python and supported by an advanced modular architecture, which means that it can easily be modified and extended by the user, in order to include alternative scoring methods and new data sources. We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database. ... -
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GenLab abbreviation of Genetics Laboratory .It is a user-friendly bioinformatics tool to support your bioinformatics lab work. GenLab creates a software user-friendly environment, which makes users to make a large number of protein, DNA, and RNA sequence analysis and excellent graphical viewing. It also provides powerful environment for simulations of Protein 3D molecular models. GenLab typically provides: •User-friendly graphical tools used for finding and working with relevant...
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JSeqUnit enhances Javadoc documentation with UML sequence diagrams that are generated with the help of JUnit tests. It uses JSeq to trace the execution of test executions. It supports re-engineering of components through improved reverse engineering of methods with the help of sequence diagrams.
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This is a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. We have added a new local action construct, i.e. a self method call.
