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Striven | All In One Business Management Software
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COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.).
Please note:
1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version:
https://github.com/cwarden45/COHCAP
This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through...
The sourcecode has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics
Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function.
The Java RTree project aims to maintain an Java version of the RTree spatial indexing algorithm. See http://jsi.sourceforge.net for more information, and http://github.com/aled/jsi for latest development code.
As of 2012-12-18, this project may now be found at Google Code.
As of 2012-12-18, this project may now be found at http://http://code.google.com/p/paba
JECO is a Evolutionary Computation Library deveoloped in Java. It includes a variety of evolutionary optimization techniques such as genetic algorithm, genetic programming, evolutionary mapping methods, particle swarm optimization, ant colonies, etc.
DataHub is the leading open-source data catalog helping teams discover, understand, and govern their data assets.
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Java API for implementing any kind of Genetic Algorithm and Genetic Programming applications quickly and easily. Contains a wide range of ready-to-use GA and GP algorithms and operators to be plugged-in or extended. Includes Tutorials and Examples.
Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
CryptoHelper is a Java program designed to aid in the decryption of classical ciphers, ie pre WWII ciphers. It brings together tools like frequency analysis, friedman tests, enciphering/deciphering for several clasical ciphers, and brute force algorithm
Java Randomness Test Suite is a gui application to run randomness tests on random stream resource (file or algorithm). Application can be run in command line. Includes general statistical tests, NIST and DIEHARD tests.
Java Chaotic Random Number Generator - Inspired by chaos theory, the intent of this generator is to produce unseeded, unpredictable numbers. The numbers will not follow a predictable sequence and will not rely on a pseudorandom algorithm.