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...The latest version includes the following toxicity prediction modules:
-Cramer rules (oral toxicity)
-Toxicity mode of action via Verhaar scheme
-Skin irritation and Eye irritation prediction
-Benigni / Bossa rulebase for mutagenicity and carcinogenicity prediction
-START biodegradation and persistence prediction
-Skin sensitisation reactivity domain
-Kroes TTC Decisiontree
-SMARTCyp - Cytochrome P450-Mediated Drug Metabolism and metabolites prediction
-Structure Alerts for the in vivo micronucleus assay in rodents (ISSMIC)
-Structural Alerts for Functional Group Identification (ISSFUNC)
-Structural alerts associated with covalent protein binding and DNA binding.
- Ames mutagenicity
Toxtree provides a plugin framework to incorporate different approaches to the estimation. ...
A collection of ACO algorithms for the data mining classification task
MYRA is a collection of Ant Colony Optimization (ACO) algorithms for the data mining classification task. It includes popular rule induction and decisiontree induction algorithms. The algorithms are ready to be used from the command line or can be easily called from your own Java code. They are build using a modular architecture, so they can be easily extended to incorporate different procedures and/or use different parameter values.
This project is now hosted at: https://github.com/febo/myra
Adaboost extensions for cost-sentive classification
Adaboost extensions for cost-sentive classification
CSExtension 1
CSExtension 2
CSExtension 3
CSExtension 4
CSExtension 5
AdaCost
Boost
CostBoost
Uboost
CostUBoost
AdaBoostM1
Implementation of all the listed algorithms of the cluster "cost-sensitive classification".
They are the meta algorithms which requires base algorithms e.g. DecisionTree
Moreover,
Voting criteria is also required e.g. Minimum expected cost criteria
Input also requires to load an arff file and a cost matrix (sample arff and cost files are uploaded for users' reference)
This extension uses weka for classification and generates the classification model along with confusion matrix. ...
Nebular is a fuzzy logic API written in Java. It is written in pure Java and comprehends fuzzy logic, fuzzy sets and operations, fuzzy control, decision support, type 2 fuzzy logic and type 2 fuzzy intervals.
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JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decisiontree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
A realtime HL7 stream based clinical decision support system
HIStream is a clinical decision support system designed to operate on data streams. Rules can be specified using (fuzzy) logic formulas with temporal extensions (e.g. creatinine level high at least 3 days after surgery). All incoming clinical data can be stored in an integrated data warehouse (using postgresql). Additionally, incoming data can be forwarded to the clinical data warehouse project i2b2.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decisiontree controlled by analytical statistics.