Search Results for "assembly"
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Showing 38 open source projects for "assembly"
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Interlocking system for modular model railroading. The goal is the development of hard- and software for an model interlocking interfacing on the one hand to the model railroad and on the other to the model of the userinterface of an real interlocking.
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. ... -
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Baya - SoC Integration Platform
Best in class SoC Integration Platform, IP-XACT, Verilog VHDL, UPF
1. Comes with 200+ high level Tcl commands around SoC platform assembly 2. Easy to start - use the verilog2baya tool to convert existing SoC/SS into Baya 3. Adhoc and Interface based connections 4. Autoconnections 5. Rule based connections between component ports 6. A variety of SoC integration Methodologies 6.a. XLS/CSV Based connections 6.b. Port-to-Port Adhoc connections 6.c. IP-XACT and System Verilog Interface based connections 6.d. ... 7. -
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Taxoblast
Taxoblast is a pipeline to identify contamination in genomic sequence
...Scaffolds that exclusively match potential contaminants may be safely removed while sequences matching partially contaminants and partially the target organism may constitute horizontal transfers or assembly artifacts and need to be examined manually. -
The AI-powered unified PSA-RMM platform for modern MSPs.SuperOps.ai is the only PSA-RMM platform powered by intelligent automation and thoughtfully crafted for the new-age MSP. The platform also helps MSPs manage their projects, clients, and IT documents from a single place.
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Java bio-informatics library to analyze and convert genomic sequence and assembly data. This library was created and used by the J. Craig Venter Institute (JCVI)
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GFinisher
genome assembler finisher, gap, gap close, sort contig
GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references. contact dievalg at gmail.com -
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Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface.
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bioluminescence
A java library for polymorphic genome assembly.
Bioluminescence is a java library for facilitating de novo genome assembly in the context of reads sampled from a single highly-polymorphic diploid individual. Bioluminescence implements a novel algorithm which uses an artificial neural network to classify contigs in a genome assembly as haplotype-specific or not-haplotype-specific. It then uses this information to partition the original input read set into two subsets, each of which has been enriched for one of the haplotypes. ... -
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openAut
Open Source Hardware For Industrial Automation
This project is aimed at producing open source hardware for real time use in industrial automation. This project will have a few sub-projects that will focus on individual hardware for various industrial purpose. Some of the sub-projects will be of type Field-IO Modules development, Analog-IO Module development etc. -
Get full visibility and control over your tasks and projects with Wrike.Wrike offers world-class features that empower cross-functional, distributed, or growing teams take their projects from the initial request stage all the way to tracking work progress and reporting results.
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Port Access for Win98/NT/2000/XP
Port Access Library Package for Win32 on VB,Java and Visual C++
Port Access 1.0 This is a Win32 programming platform indipendent Microsoft Windows 98/NT/2000/XP compatible hardware port access driver and API for Visual Basic,Java and Visual C++ . This project still under development. -
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Timina is a Java web-based application for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences.
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The Blast2SNP is able to pick out synonymous, non-synonymous mutations and indels from draft assembly sequences by performing BLAST search against the reference ORF sequences.
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JFinisher
JFinisher is software for alignment, editing and manipulation DNA seqs
JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and ability to export results in the standard formats of the area. -
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An open-source collection of materials for lectures, tutorials, labs, and software for a variety of primarily Computer Science courses. The materials include various course notes, presentation slides, source code samples, etc.
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A phologenetic supertree construction/assembly tool using triplet similarity as the objective function.
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The project includes a software, which uses an AI for autonomous sailing of a small sailing boat, equipped with various sensors and GPS. There are various methods for evaluation and improvement of sensor data, route planning, collision avoidance.
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This is a pipeline that is used to store an EST or Genome assembly information including reads and their alignment in a mysql database. Further more, it provides a set of scripts to mine SNPs and other statistics from the assembly.
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This is an IDE for 8051 which can be used to write and simulate assembly language program and find out errors if any. The project implements almost all 8051 functions. It visually shows the content of all register and memory.
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DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
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JPACS, Java Processor and Cache Simulator, was developed to give a simple and clear tool to simulate a processor with a complete associative memory cache at ISA level, using direct memory access or using a program written in assembly.
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A Java-written MIPS simulator developed to stimulate people learning the Assembly language. It adds graphics, sounds and user interation to make writing assembly programs more interesting.
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OpenWebServo is an Open Source Hardware and Software project. Its main goal is to develop a web-controlled servo system. The project includes web application, firmware and hardware design.
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Tracking and reporting system for the processing, monitoring, and enforcement of permits issued by the Oklahoma State Department of Environmental Quality. Features web access, CDX gateway for the EPA, and an automatic document assembly system for Word.
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JSim8086 is platform-independent Assembly Language Simulator of the Intel 8086 CPU. It was designed to be a learning tool (CAL) for first year Computing students who are learning Computer Systems Organisation and Assembly Programming.
