Search Results for "nuclear"
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Showing 46 open source projects for "nuclear"
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A library of C codes for storing and managing nuclear reaction networks, that is, ensembles of nuclear species and reactions among them.
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nmrshiftdb2 is a NMR database (web database) for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. The nmrshiftdb2 software is open source, the data is published under an open content license. The core of nmrshitdb2 are fully assigned spectra with raw data and peak lists (we have pure peak lists as well).
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This program calculates excitation energies E0 and E2 transition strengths within the "Confined Beta Soft" nuclear structure model as described in [N. Pietralla and O. M. Gorbachenko, Phys. Rev. C 70, 011304(R) (2004)]. Parameter fits are possible.
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SpecTcl is a Tcl/Tk based histogrammer suitable for analysis of nuclear physics data. SpecTcl is relatively easy to learn, and is based on top of a very open C++ histogramming class framework. SpecTcl has been developed under NSF grant PHY-9528844 and DOE grant DE-SC0000661 Note that as of July 2023, all future development and release packages will be occur at https://github.com/FRIBDAQ/SpecTcl
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AGLAEMap
Read EDF File / view mapping
The proper way to quote AGLAEMap is: Programs for visualization, handling and quantification of PIXE maps at the AGLAE facility L. Pichon, T. Calligaro, Q. Lemasson, B. Moignard, C. Pacheco Nuclear Instruments and Methods in Physics Research Section B, Volume 363, 15 November 2015, Pages 48-54 doi:10.1016/j.nimb.2015.08.086 Due to the copyright transfer to the publisher, the online availability of the article will depend on your subscription to ScienceDirect. The abstract should be available in any case. This software read Esrf Data Format (EDF) files It has been developed to handle on a large number of detectors and series of maps. ... -
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Insensitive
NMR spin dynamics simulation
Insensitive (Incredible Nuclear Spin EvolutioN SImulation Tool Intended for Visual Education) is an application to simulate the NMR experiment based on the quantum mechanical density matrix formalism. It is available for Mac OS X 10.6 and above and iOS 5.1.1 and above. Please refer to the paper published in Concepts In Magnetic Resonance, 2011, 38A (2), 17-24. -
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The NSCL Data Acquisition system is a general purpose nuclear physics data acquisition system in use at several university labs and, of course, the National Superconducting Cyclotron Laboratory at Michigan State University. The development of the NSCLDAQ is currently funded by DOE grant DE-SC0000661 Note that as of July, 2023 all development and release packages will be hosted at https://github.com/FRIBDAQ/NSCLDAQ
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VMS Draw
user-friendly access to the latest computational spectroscopy tools
VMS Draw provides general utilities (e.g. normalization, conversion, and other manipulations of several spectra at the same time) and a flexible graphical user interface (GUI) for an easy use by non-specialists which allows a seamless flow of information between experimentally and theoretically oriented researchers. Finally, it permits effective interactions with other electronic structure codes [e.g., nuclear magnetic resonance (NMR), microwave] even if Gaussian 16 offers the widest set of methods for computational spectroscopy. -
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ASR for Medical Reporting
Automatic speech recognition system for medical reporting in spanish.
This is a functional prototype of automatic speech recognition system for medical reporting in Spanish using CMU Sphinx4 ASR toolkit. This ASR use pre-trained acoustic model and context dependent language model in nuclear medicine diagnostics. -
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Jam--Nuclear Physics Data Acquisition
Java-based nuclear physics data acquisition.
This project now lives at https://github.com/dwvisser/jam-daq-code/ Jam is an easy-to-use self-contained data acquisition and analysis system for VME-based (or CAMAC-based) nuclear physics experiments. Jam has an easy, standard GUI for taking and sorting multi-parameter event-based data into 1-d and 2-d histograms. -
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DoseInHumanBody
Patient dose from medical X-ray and other sources
...INTERFACE is a small program to compute the correction to dosimeter reading when used in conditions other than the calibration ones. This package does not contain all data required to run, i.e. does not contain GEANT4 libraries and GEANT4 nuclear data (for saving space). It does contain however the X-Ray spectrum data. Read README.txt me inside Build folder for how to fix it. Source code included. Also, available on GitHub: https://github.com/ZiliasTheSaint/DoseInHumanBody.git -
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ATOMKI Common Data Acquisition
Nuclear physics data acquisition system
Nuclear physics data acquisition system. The suit of applications can be used to collect data from physics experiments using CAMAC/CAEN/VME devices. The system is quite specialized, but the code can still be useful for others doing something similar... -
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FORTRAN Unit Test Framework (FRUIT)
FORTRAN Unit Test Framework FRUIT - TDD in FORTRAN
...Rake is to build the project elegantly. This project also demonstrate a new way to build mixed language code in an alternative way than Make. Most of the FORTRAN are important in nature, used in nuclear and aerospace codes, etc, and maintained and written actively. Please help to bring TDD practices to the FORTRAN community. The change could be very hard, personally, I quit, since I could not make the change. I hope your organization will be successful. Enjoy a cup of fruit while maintaining FORTRAN ! Andrew Hang Chen and other maintainers who feel importance of TDD in cr -
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fairy
flexible analysis of irradiation yields in nucelar spectroscopy
This program is for easy, fast and intuitive visualization and analysis of nuclear spectroscopic data. The program's functionality can be extended with plugins. -
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DORY
For mining KASH proteins (SUN domain-interacting proteins)
...***Please make sure BLAST+ is installed on your computer.*** Please see the following publication for detail: Zhou X, Graumann K, Wirthmueller L, Jones JDG, Meier I (2014) Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants. The Journal of Cell Biology 205(5):677-692. http://jcb.rupress.org/content/205/5/677.full Please see other useful tools for biology research: https://sourceforge.net/projects/cloversystem/?source=directory -
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ThermoPower is a Modelica library for the modelling of thermal power plants. It provides basic building blocks for system-level dynamic modelling of conventional, combined cycle, combined heat&power, ORC, solar, and nuclear plants.
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Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, biochemistry, or related areas
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LibNucNucGam
Nuclear collision secondary particle production cross sections.
This Python library contains the parametrization of the Nucleus-Nucleus pi-meson (including subthreshold pions) and the direct hard photon gamma-ray production cross sections channels for calculating the secondary gamma-ray and electron/positron spectra based on arXiv:1608.03348. Please, if you use this library DO NOT reference to this webpage, instead reference to arXiv:1608.03348, "Parametrization of the nucleus-nucleus gamma-ray production cross sections below 100 GeV/nucleon:... -
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ThiMeT
Thickness Measurement Tool for SRIM
ThiMeT v1.0 Thickness Measurement Tool for SRIM ThiMeT is a code for thickness calculation using SRIM (www.srim.org) stopping power values. ThiMeT code also can be used for the determination of the required thickness for energy degraders which are needed for nuclear reactions. ThiMeT calculation is very easy and quick compared to the TRIM code calculation. Please cite ThiMeT code as C. YALÇIN, “Thickness measurement using alpha spectroscopy and SRIM”, J. Phys.: Conf. Ser. 590, 012050 (2015); http://www.thimet.org TTEC v2.4 TRIM Transmission Energy Calculation TTEC is a code for calculation of average transmission energy using "Transmit.txt" output file of TRIM Code (www.srim.org). ... -
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GENFIT has been moved to github: https://github.com/GenFit/GenFit GENFIT - a generic track reconstruction framework for nuclear and particle physics
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RelKinema
Relativistic two-body kinematics calculator for nuclear reaction
Relativistic 2-body kinematics calculator for nuclear reaction, including mass data manager, result table browser and plotter. -
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GoIFISH
for the semi-automated analysis of IFISH images
GoIFISH has been developed for the analysis of IFISH (Immunofluorescence + Fluorescence in situ Hybridisation) images, performing nuclear, membrane and spot detection. Users can manually edit segmentation results, perform background adjustments, construct heatmaps, topology maps, and perform cell classification. All results can be exported for further analysis. GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment. ... -
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MendelChecker
QC for variant discovery from next gen sequence in pedigrees
MendelChecker is a likelihood-based measure of Mendelian segregation of Single Nucleotide Polymorphisms (SNPs) in nuclear pedigrees. We developed this method as a quality control measure for novel variant discovery from noisy next-generation sequencing data in pedigrees, such as Restriction site-associated DNA Sequencing (RAD-seq) in non-model organisms. This method implements comparison of heterogametic vs. homogametic transmission, i.e., sex linked vs. autosomal segregation. -
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PyRadMon
Automated reporting of Geiger Muller counter readings to RadMon.org
...Just because the Cold War is "over" does not mean that there is no more threat of a radiological attack. In fact, the U.S. Homeland Security Council lists the "Detonation of a 10 Megaton Improvised Nuclear Device" as "Scenario #1" among the top 15 threats to American security. Or, if you do not believe that a nuclear bomb is likely, what about all the Chernobyl-style Soviet-era nuclear power stations still in service? The point is: let us work together as free people to jointly report and track radiation levels around the globe. ... -
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Nuclei
Feature rich GUI for nuclear decay schemes
Nuclei is a software tool for the displaying of nuclear decay schemes and estimated energy spectra, the calculation of angular γ emission anisotropies, and the automated search for appropriate decay cascade properties. It uses the Evaluated Nuclear Structure Data Files (ENSDF). A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M.
