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Showing 4 open source projects for "windows install"
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pexm - JAGS module
JAGS module for the piecewise exponential distribution
...Currently, it can only be implemented in JAGS through methods to indirectly specify the likelihood based on the Poisson or Bernoulli probabilities. Our module provides a more straightforward implementation with faster results. The "tar.gz" file provided for download here (installation for both Windows and Unix systems) is related to an R package called "pexm". This package is intended to install and load the new module. Details can be found in the paper https://www.jstatsoft.org/article/view/v100i08 or https://arxiv.org/abs/2004.12359 Developers: Vinícius D. Mayrink, João D. N. Duarte and Fábio N. Demarqui. Departamento de Estatística, ICEx, UFMG. -
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MANTIS R Package
Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens
This repository contains the most updated code version of MANTIS, the Multi-locus ANTIgenic Simulator R-package. MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK. For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN... -
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gogadget
A toolbox for interpretation and visualization of RNA-seq GO analysis
...It is developed especially for the use in combination with goseq. The functions that are available in this package are extensively described in the user's guide. To install the package download the "gogadget_2.1.tar.gz" file, open R and install with the following line: install.packages( "C:/your/directory/gogadget_2.1.tar.gz", repos = NULL, type="source") The package was made in R 3.4.2 on a Windows 7 computer, and is also tested on Ubuntu. Please cite the following paper if you publish results obtained using gogadget: Nota, B. (2017), Gogadget: an R Package for Interpretation and Visualization of GO Enrichment Results. ... -
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Penobscot River RKM Calculator
Look up in river distances in the Penobscot River drainage.
Allows user to input a .csv of UTM coordinates within the Penobscot River basin and calculates in-river distance (in kilometers) from the river's mouth to the locations of interest. The results are output into a new .csv file named yourfilename+RKM.csv. For the purposes of this calculator, river kilometer 0 is located at 516414E 4927755N in UTM Zone 19N, near the southwest corner of Verona Island. Simply download the setup file and run it to install the program. Please contact me with... -
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