Search Results for "assembly"
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Showing 93 open source projects for "assembly"
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Run applications fast and securely in a fully managed environmentRun frontend and backend services, batch jobs, deploy websites and applications, and queue processing workloads without the need to manage infrastructure.
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Comet Backup - Fast, Secure Backup Software for MSPsComet is a flexible backup platform, giving you total control over your backup environment and storage destinations.
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OpenKore
A free/open source client and automation tool for Ragnarok Online
OpenKore is a free and open source automation tool and custom client for the online game Ragnarok Online. It provides a flexible scripting system that allows users to automate gameplay, including navigation, combat, trading, and interaction with other players. The project supports plugins and modular extensions, enabling customization for different servers and play styles. OpenKore is cross-platform, running on Windows, Linux, and macOS, and is written primarily in Perl. With a strong... -
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BoringSSL
Mirror of BoringSSL
BoringSSL is a Google-maintained fork of OpenSSL, designed specifically to meet the security, performance, and maintainability needs of Google’s infrastructure and products. While fully open source, BoringSSL is not intended for general public use — it serves as a streamlined, heavily modified SSL/TLS and cryptography library optimized for Google’s internal ecosystem, including Chrome/Chromium, Android, and other Google services. The project prioritizes security, simplicity, and... -
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Asmosis
A set of tools related to assembly language programming.
Project Asmosis provides a set of tools related to assembly language programming. The tools include: - the Asm::X86 Perl module, - AsmDoc - an HTML documentation generator for assembly language, - Asm4Doxy - Assembly converter for Doxygen (http://www.doxygen.org/), - converters between various assembly language dialects: NASM (The Netwide Assembler, https://www.nasm.us), fasm (flat assembler, https://flatassembler.net) and GNU as, - converters from C/C++ header files to assembly language header files, - make4fasm - a Makefile generator for fasm, - Linux-2.6 kernel module helpers for fasm and NASM, - macros for Autoconf (https://www.gnu.org/software/autoconf/), - pieces of code that may be useful for starting developing a simple operating system. ... -
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SHS VPN Client
VPN client for Small HTTP server
VPN client for Small HTTP server Small HTTP server includes a VPN server that works on the https protocol. This is a client application for this server. -
The full-stack observability platform that protects your dataLayer, tags and conversion dataCode-Cube.io detects issues instantly, alerts you in real time and helps you resolve them fast. No manual QA. No unreliable data. Just data you can trust and act on.
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Small HTTP server
Universal server
It is not only a web server, it is also Mail server, DNS server, FTP server, Proxy server, VPN server and client... All in one! This program will help you to open all the possibilities Internet can offer for your company - public site, provide Internet access and personal mailboxes for each employee! HTTP server. Server Side Includes. Regular expression in SSI. CGI interface for scripts (Executable files; Perl,PHP, or another external interpreters) ... -
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. ... -
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open-watcom
Open Watcom C/C++ compilers and tools Fork
C/C++ compilers and tools to compile and build for targets DOS 16/32-bit, RDOS, Windows 16/32-bit, OS/2 16/32 bit, Linux 32-bit (x86), Netware running on host OS DOS, Windows 16/32/64-bit, OS/2, Linux 32/64-bit (x86/x64) Open Watcom is now completely moved to GitHub Open Watcom 2.0 https://github.com/open-watcom/open-watcom-v2#open-watcom-v2-fork Open Watcom 1.9 https://github.com/open-watcom/open-watcom-1.9 -
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MANTI
MANTI - Mastering Advanced N-Termini Interpretation
MANTI is a one-stop shop N-termini annotation & evaluation solution. MANTI was previously (un)known as muda.pl ahead of v3.7, the project was renamed to MANTI.pl with v3.7 on 2019-06-24. It congregates information from different MaxQuant or DiaNN/MSFragger output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred... -
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GenSeed-HMM
Progressive assembly tool using DNA, protein or profile HMMs as seeds.
GenSeed-HMM is a program for seed-driven progressive DNA assembly. It differs from the previously published GenSeed in many aspects, but more pointedly by being able to use an HMM profile as seed. Basically, GenSeed-HMM performs three operations, repeatedly: - recruit reads by matching them to a seed - assemble the recruited reads (including previously assembled contigs) - generate new seeds (for the next round of progressive assembly) from the extremities of all generated contigs The first seed is provided by the user, and can be a piece of DNA or protein sequence, or an HMM profile, for increased sensitivity. ... -
The AI-powered unified PSA-RMM platform for modern MSPs.SuperOps.ai is the only PSA-RMM platform powered by intelligent automation and thoughtfully crafted for the new-age MSP. The platform also helps MSPs manage their projects, clients, and IT documents from a single place.
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ANDRAX Hacker's Platform
Advanced Ethical Hacking and Penetration Testing Platform
The most complete and Advanced Penetration Testing and Ethical Hacking Platform dedicated to Advanced Professionals. Developed to bring the power of Offensive Security in the anyone's pocket 100% OPEN SOURCE - ANDRAX is a independent solution for Security professionals who loves Linux -
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MANTI.pl / muda.pl
muda.pl - MQ unified data assembler
...The central anchor for the data congregation is the modificationSpecificPeptides.txt file - additional data is inferred from different other source files from the MaxQuant txt folder but the starting point for the data assembly is solely the modificationSpecificPeptides.txt file. Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation. For a more thorough explanation of script parameters and evaluation strategy, please consult the extensive manual PDF. -
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crAss
crAss: comparative metagenomics by cross-assembly
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Meraculous-2D
Eukaryotic Genome Assembler
...Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid allelic variation - Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy. The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server. Manuscripts in submission: https://arxiv.org/abs/1703.09852 https://arxiv.org/abs/1608 -
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The NT POSIX C Runtime Library is an IEEE standard runtime library for the NT POSIX subsystem. It can be used as a complete replacement or a side by side alternative for what is shipped with the Interix SDK.
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
...https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution. VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. Citation: http://www.ncbi.nlm.nih.gov/pubmed/ -
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Meta Assembler for de novo assembly results. GARM (Genome Assembly Reconciliation and Merging) is a pipeline to merge results from different assemblers or results from different DNA sequencing technologies.
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RGAAT
Reference based genome assembly and annotation for new genome
This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format). -
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
...However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting in near perfect pre-assembly reads. Contigs are generated using different assembly algorithms and then merged together to achieve longer continuity. Re-aligning all the reads back to the draft contigs and recalibrating each sequence base achieves a final consensus. Using finished clones for QC, the pipeline is able to obtain assemblies with clone coverage of 99.7% and consensus base quality of Q39. ... -
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GPFS Monitor Suite
A suite of tools for monitoring GPFS clusters.
...The suite uses perl scripts and Ganglia to provide low impact near real time monitoring of a GPFS multi-cluster environment consisting of 4,700+ Linux systems. This is not a standalone package, some assembly on your part is required! -
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Transcriptome assembly ORA
Reference-based transcriptome reconstruction software
Sofware for reference-based transcriptome reconstruction. It performs reconstruction starting from short reads obtained from RNA-seq. It is best suited to manage the transcriptomes of lower eukaryotes with a low number of introns per gene and it can be used also for procariotes. It needs a SAM file with the reads aligned on the reference genome and (optional) a gff file with the position of genes on the reference genome. It provides in output the positions of the transcripts identified,... -
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SPA
SPA: a short peptide assembler for metagenomic data
The metagenomic paradigm offers the opportunity to study protein families, and therefore the metabolic and functional potential, of the constituent microbes in a community. A nucleotide assembly-based strategy does not fare much better since metagenomic assemblies are typically very fragmented and also leave a large fraction of reads unassembled. We present a method for reconstructing complete protein sequences directly from NGS metagenomic data. Our framework is based on a novel Short Peptide Assembler (SPA) that assembles protein sequences from their constituent peptide fragments identified on short reads. ... -
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Crystal Space is an Open Source 3D SDK for Unix, Windows, and MacOS/X. It renders with OpenGL and features GLSL shaders, CG shaders, deferred rendering, dynamic shadows, bullet based physics library, terrain engine, skeleton based animation meshes, exporter for Blender, portals, etc...
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Firmware for Cypress' EZ-USB (AN2131) device that lets you use keyboards, mice etc. as USB compliant Human Interface Devices.
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The repository of the binaries for Windows of Parrot (Perl6 VM). The Parrot speaks your language but lives on http://www.parrot.org/
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AMOS
AMOS is a collection of tools for genome assembly
AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.
