Search Results for "genetic algorithm java" - Page 3
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Showing 651 open source projects for "genetic algorithm java"
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java-string-similarity
Implementation of various string similarity and distance algorithms
Implementation of various string similarity and distance algorithms: Levenshtein, Jaro-winkler, n-Gram, Q-Gram, Jaccard index, Longest Common Subsequence edit distance, cosine similarity. A library implementing different string similarity and distance measures. A dozen of algorithms (including Levenshtein edit distance and sibblings, Jaro-Winkler, Longest Common Subsequence, cosine similarity etc.) are currently implemented. The main characteristics of each implemented algorithm are... -
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LoopMatcher
Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor... -
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Seshat Naming and Balancing Service
Extended COS Naming and Balancing Service
The Seshat Extended Naming and Balancing Service supplies a fully conformant COS Naming Service with extensions allowing you to store any serialized object in the naming tree. The Service also supplies a Balancer for session balancing multiple CORBA servants of the same type in balanced groups. The balanced groups can be bound to the naming tree. If you look up a balanced group you will transparently get a reference to an object in the group. The members of a group can be delivered either... -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through... -
Outbound sales softwareAdversus is an outbound dialing solution that helps you streamline your call strategies, automate manual processes, and provide valuable insights to improve your outbound workflows and efficiency.
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Flip card learning program for iPhone with a spaced learning algorithm. Create your own databases and edit the cards directly on the iPhone. Import Palm databases or csv-formatted files and backup your data with our Java application.
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jsprit
Open source toolkit for solving rich vehicle routing problems
jsprit is a java based, open-source toolkit for solving rich Traveling Salesman Problems(TSP) and Vehicle Routing Problems(VRP). It is lightweight, flexible and easy-to-use, and based on a single all-purpose meta-heuristic. Setting up the problem, defining additional constraints, modifying the algorithms and visualizing the discovered solutions is as easy and handy as reading classical VRP instances to benchmark your algorithm. -
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Simple Cipher Algorithm
Java Encryption Utility.
Very simple to use symmetric Java encryption utility. Please write a review. Email me with any questions or problems. -
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AhoCorasickDoubleArrayTrie
An extremely fast implementation of Aho Corasick algorithm
AhoCorasickDoubleArrayTrie is a Java implementation of the Aho–Corasick multi-pattern matching algorithm that is optimized using a Double-Array Trie data structure. It is designed for fast keyword scanning across large texts, where you want to search for many patterns simultaneously and efficiently. The core idea is to build an automaton from a dictionary of patterns, then stream through input text to emit matches with minimal overhead. -
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Skalli
IVS & ILRS Reference Point Determination
Skalli is a simple tool to estimate the IVS (International VLBI Service for Geodesy and Astrometry) and ILRS (International Laser Ranging Service) reference point of a radio or laser telescope. -
The AI-powered unified PSA-RMM platform for modern MSPs.SuperOps.ai is the only PSA-RMM platform powered by intelligent automation and thoughtfully crafted for the new-age MSP. The platform also helps MSPs manage their projects, clients, and IT documents from a single place.
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AES Everywhere
Cross Language AES 256 Encryption Library
AES Everywhere is Cross Language Encryption Library that provides the ability to encrypt and decrypt data using a single algorithm in different programming languages and on different platforms. This is an implementation of the AES algorithm, specifically CBC mode, with 256-bit key length and PKCS7 padding. It implements OpenSSL-compatible cryptography with randomly generated salt. -
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weka-MTreeClusterer
Flat clustering algorithm based on MTrees implemented for weka.
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IP-Chat
UDP based desktop chatting app which supports AES-256 bit encryption.
Simple Encrypted chat application built with Java. It uses AES-256 bit block cipher algorithm. -
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Javaluator
A java infix evaluator based on "Shunting Yard" algorithm.
Evaluate an arithmetic expression is as simple as: Double result = new DoubleEvaluator().evaluate("(e^3-1)*sin(pi/4)*ln(pi^2)"). But Javaluator provides you with much more ... Key features: - Functions support, including variable argument count. - Constants support: e, pi, etc ... - Variables support: Example sin(x) for x = pi/4. - Highly configurable: Reduce the built-in operator or function sets, define your own brackets. - Extensible: Define your own grammar, or extends the... -
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OpenDino
Open Source Java platform for Optimization, DoE, and Learning.
OpenDino is an open source Java platform for optimization, design of experiment and learning. It provides a graphical user interface (GUI) and a platform which simplifies integration of new algorithms as "Modules". Implemented Modules Evolutionary Algorithms: - CMA-ES - (1+1)-ES - Differential Evolution Deterministic optimization algorithm: - SIMPLEX Learning: - a simple Artificial Neural Net Optimization problems: - test functions - interface for executing other programs (solvers) - parallel execution of problems - distributed execution of problems via socket connection between computers Others: - data storage - data analyser and viewer -
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The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function. Jenetics allows you to minimize or maximize the given fitness function without tweaking it. ...
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Bucket Fill Algorithm
Simple Bucket Fill Demo
This is Simple java implementation of bucket fill algorithm .Copy the code and Run in Console or IDE. Draw your shapes and click in the middle to fill the shapes. Precombiled jar for Windows OS https://sourceforge.net/projects/bucket-fill/files/G_BucketFill.jar/download -
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines... -
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EECluster
Tool for energy-efficient resource management in HPC clusters
EECluster is software tool for managing the energy-efficient allocation of the cluster resources. EECluster uses a Hybrid Genetic Fuzzy System as the decision-making mechanism that elicits part of its rule base dependent on the cluster workload scenario, delivering good compliance with the administrator preferences. In the latest version, we leverage a more sophisticated and exhaustive model that covers a wider range of environmental aspects and balances service quality and power... -
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TEESer
Tool for Engineering Emergent Selforganizing bEhavioR
...Designers can continue to use their domain tools such as favorable simulator and by pluging it into the framework can take advantage of distributed simulations in the grid, various analyzers, optimizers (particle swarm optimization, genetic algorithms, ...). See Wiki pages for more information. -
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JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
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ATTENTION: For more info and latest version, refer to https://github.com/estigma88/jdhtuq. jDHTUQ is a peer-to-peer DHT system based in Chord algorithm, but built like API to generalize the implementation of peer-to-peer DHT systems. jDHTUQ have two fundamental services , put and get of resource.
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Formatomatic
Population Genetic File Creator and Converter
Formatomatic creates infiles for several population genetic analysis programs from csv, genepop or convert* (excel) files. It only handles diploid microsatellite data for now. I may eventually include other read or write formats (email me if there is some functionality you need and I will work on it if I have time). This program was initially developed for in-lab use to format microsatellite data extracted from a custom database system. I have made it available in case it is useful to... -
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JCSprout
Basic, concurrent algorithm
JCSprout is a curated learning path for Java engineers that mixes concise notes, diagrams, and runnable examples to cover core computer science and JVM topics. It walks readers through data structures and algorithms, networking fundamentals, Java concurrency, JVM memory model and GC, and common interview problem patterns. The repository emphasizes understanding over memorization, linking conceptual summaries with small code artifacts that can be compiled and profiled. It also highlights best... -
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Easy Machine Learning
Easy Machine Learning is a general-purpose dataflow-based system
Machine learning algorithms have become the key components in many big data applications. However, the full potential of machine learning is still far from being realized because using machine learning algorithms is hard, especially on distributed platforms such as Hadoop and Spark. The key barriers come from not only the implementation of the algorithms themselves but also the processing for applying them to real applications which often involve multiple steps and different algorithms. Our... -
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).
