Search Results for "data structure"
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Showing 83 open source projects for "data structure"
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Securden Privileged Account ManagerDiscover and manage administrator, service, and web app passwords, keys, and identities. Automate management with approval workflows. Centrally control, audit, monitor, and record all access to critical IT assets.
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MarketData.jl
Time series market data
The MarketData package provides open-source financial data for research and testing. The data is from Quandl and is free end-of-day stock data. It is public domain without restrictions. The TimeSeries TimeArray data structure is used to store the data, but conversion to other data structures, including DataFrames and AxisArrays, is supported. -
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CausalInference.jl
Causal inference, graphical models and structure learning in Julia
Julia package for causal inference and analysis, graphical models and structure learning. This package contains code for the PC algorithm and the extended FCI algorithm, the score based greedy equivalence search (GES) algorithm, the Bayesian Causal Zig-Zag sampler and a function suite for adjustment set search. -
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PlantUML
Generate diagrams from textual description
Generate UML diagram from textual description. PlantUML is not affected by the log4j vulnerability. The easiest way to test PlantUML is in an online solution that has PlantUML embedded, such as our online server. After testing, you may want to install PlantUML locally. Run (or have your software call) PlantUML, using sequenceDiagram.txt as input. The output is an image, which either appears in the other software, or is written to an image file on disk. Diagrams are defined using a simple and... -
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MultilayerGraphs.jl
Julia package for the creation and analysis of multilayer graphs
MultilayerGraphs.jl is a Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs. A multilayer graph is a graph consisting of multiple standard subgraphs called layers which can be interconnected through bipartite graphs called interlayers composed of the vertex sets of two different layers and the edges between them. The vertices in each layer represent a single set of nodes, although not all nodes have to be represented in... -
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Obsidian Visual Skills Pack
Generate Canvas, Excalidraw, and Mermaid diagrams from text
LLM-TLDR is a Python-based tool designed to dramatically reduce the amount of code a large language model needs to read by extracting the essential structure and context from a codebase and presenting only the most relevant parts to the model. Traditional approaches often dump entire files into a model’s context, which quickly exceeds token limits; LLM-TLDR instead indexes project structure, traces dependencies, and summarizes code in a way that preserves semantic relevance while shrinking... -
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MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
MolecularGraph.jl is a graph-based molecule modeling and chemoinformatics analysis toolkit fully implemented in Julia. -
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ProbabilisticCircuits.jl
Probabilistic Circuits from the Juice library
This module provides a Julia implementation of Probabilistic Circuits (PCs), tools to learn structure and parameters of PCs from data, and tools to do tractable exact inference with them. Probabilistic Circuits provides a unifying framework for several family of tractable probabilistic models. PCs are represented as computational graphs that define a joint probability distribution as recursive mixtures (sum units) and factorizations (product units) of simpler distributions (input units). ... -
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FileTrees.jl
Parallel file processing made easy
Easy everyday parallelism with a file tree abstraction. Read a directory structure as a Julia data structure, (lazy-)load the files, apply map and reduce operations on the data while not exceeding available memory if possible. Make up a file tree in memory, create some data to go with each file (in parallel), write the tree to disk (in parallel). FileTrees is a set of tools to lazy-load, process and save file trees. -
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Emerge
Browser-based interactive codebase and dependency visualization tool
Emerge (or emerge-viz) is an interactive code analysis tool to gather insights about source code structure, metrics, dependencies, and complexity of software projects. You can scan the source code of a project, calculate metric results and statistics, generate an interactive web app with graph structures (e.g. a dependency graph or a filesystem graph), and export the results in some file formats. Emerge currently has parsing support for the following languages: C, C++, Groovy, Java,... -
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LinearSolve.jl
High-Performance Unified Interface for Linear Solvers in Julia
LinearSolve.jl is a unified interface for the linear solving packages of Julia. It interfaces with other packages of the Julia ecosystem to make it easy to test alternative solver packages and pass small types to control algorithm swapping. It also interfaces with the ModelingToolkit.jl world of symbolic modeling to allow for automatically generating high-performance code. Performance is key: the current methods are made to be highly performant on scalar and statically sized small problems,... -
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Architecture as a code
Visualize, collaborate, and evolve the software architecture
Architecture as a code is an open-source modeling language and toolkit that enables software teams to describe, visualize, collaborate on, and maintain software architecture as code. Inspired by the C4 Model and other architectural DSLs, LikeC4 lets you define your system’s structure in a textual DSL and then automatically generate consistent diagrams that reflect that design, ensuring that architecture documentation stays in sync with source code changes. The project includes command-line... -
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city-roads
Visualization of all roads within any city
city-roads is a data visualization and mapping project that renders street networks of cities as vector paths, offering an interactive, zoomable experience that highlights how cities are stitched together by their road infrastructure. It typically fetches open map data (such as from OpenStreetMap) and then processes that data into geometry suited for rendering in the browser, allowing users to explore intricate road layouts at various scales. -
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EAGO.jl
A development environment for robust and global optimization
EAGO is an open-source development environment for robust and global optimization in Julia. EAGO is a deterministic global optimizer designed to address a wide variety of optimization problems, emphasizing nonlinear programs (NLPs), by propagating McCormick relaxations along the factorable structure of each expression in the NLP. Most operators supported by modern automatic differentiation (AD) packages (e.g., +, sin, cosh) are supported by EAGO and a number of utilities for sanitizing... -
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PowerSimulations.jl
Julia for optimization simulation and modeling of PowerSystems
PowerSimulations.jl is a Julia package for power system modeling and simulation of Power Systems operations. Provide a flexible modeling framework that can accommodate problems of different complexity and at different time scales. Streamline the construction of large-scale optimization problems to avoid repetition of work when adding/modifying model details. Exploit Julia's capabilities to improve computational performance of large-scale power system quasi-static simulations. The flexible... -
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brms
brms R package for Bayesian generalized multivariate models using Stan
brms is an R package by Paul Bürkner which provides a high-level interface for fitting Bayesian multilevel (i.e. mixed effects) models, generalized linear / non-linear / multivariate models using Stan as the backend. It allows R users to specify complex Bayesian models using formula syntax similar to lme4 but with far more flexibility (distributions, link functions, hierarchical structure, nonlinear terms, etc.). It supports model diagnostics, posterior predictive checking, model comparison,... -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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libsombrero
Astronomical object/structure detection from 1D and 2D data sets.
Sombrero is a fast wavelet image processing and object detection C library for astronomical images. Sombrero is named after the "Mexican Hat" shape of the wavelet masks used in image convolution and is released under the GNU LGPL library. -
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XLibraryDisplay
A sequence analysis tool for protein engineering
XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing. Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016 Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s -
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Algorithm Visualizer
Interactive Online Platform that Visualizes Algorithms from Code
Hacker Scripts is a light-hearted collection of small automation and demo scripts that solve amusing everyday tasks or illustrate quick integrations with external services. The repo collects short programs (originally a set of shell and Ruby scripts) and many community contributed ports in other languages to show “how you might automate X” — for example sending a quick SMS, firing off an email, or triggering a coffee maker — with examples and scheduling snippets included. The README explains... -
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DeepH-pack
Deep neural networks for density functional theory Hamiltonian
DeepH-pack is the official implementation of the DeepH (Deep Hamiltonian) method described in the paper Deep-learning density functional theory Hamiltonian for efficient ab initio electronic-structure calculation and in the Research Briefing. DeepH-pack supports DFT results made by ABACUS, OpenMX, FHI-aims or SIESTA and will support HONPAS. -
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GTB: Graphics Toolbox
C++ libraries and apps for computer graphics and data visualization
The Graphics Toolbox (GTB) is a collection of C++ libraries and apps for computer graphics and data visualization. Wagner Correa initially created GTB as part of his Ph.D. research at Princeton University in collaboration with Professor Claudio Silva and Dr. James Klosowski. Several other researchers later contributed to GTB (see the AUTHORS file). -
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ProxSDP.jl
Semidefinite programming optimization solver
ProxSDP is an open-source semidefinite programming (SDP) solver based on the paper "Exploiting Low-Rank Structure in Semidefinite Programming by Approximate Operator Splitting". The main advantage of ProxSDP over other state-of-the-art solvers is the ability to exploit the low-rank structure inherent to several SDP problems. -
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Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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ThreadsX.jl
Parallelized Base functions
...All functions that exist directly under ThreadsX namespace are public API and they implement a subset of API provided by Base. Everything inside ThreadsX.Implementations is an implementation detail. The public API functions of ThreadsX expect that the data structure and function(s) passed as argument are "thread-friendly" in the sense that operating on distinct elements in the given container from multiple tasks in parallel is safe. For example, ThreadsX.sum(f, array) assumes that executing f(::eltype(array)) and accessing elements as in array[i] from multiple threads is safe. -
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Flux3D.jl
3D computer vision library in Julia
Flux3D.jl is a 3D vision library, written completely in Julia. This package utilizes Flux.jl and Zygote.jl as its building blocks for training 3D vision models and for supporting differentiation. This package also have support of CUDA GPU acceleration with CUDA.jl.
