Search Results for "microscopy"

A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.

Gwyscope is a low cost, open hardware, Digital Signal Processor (DSP) suitable for Scanning Probe Microscopy measurements, focusing on demonstrating the concept of adaptive scanning, general XYZ data acquisition and statistical data processing on the controller level. More details can be found in: M. Valtr et al., Scanning Probe Microscopy controller with advanced sampling support, HardwareX, Volume 15, e00451 https://www.hardware-x.com/article/S2468-0672(23)00058-5/fulltext It is based on a low cost FPGA board Red Pitaya and additional high bit depth AD and DA converters. ...

Fast FDTD solver with graphics card support. Optimized for nanoscale optics - scanning near field optical microscopy, rough surface scattering and solar cells. Uses CUDA environment for graphics card operation.

GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured.

From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of...

The pyBioImage is a python a python based biological imaging suite tailored to the problem of finding Germinal Center "spots" within multidimensional microscopy images as it is described in the research paper: "Software tool for 3D extraction of germinal centers", by David N. Olivieri, Merly Escalona and Jose Faro.

DIGIgrain is a general 3D data processing, data reduction program for 3D X-ray Diffraction Microscopy (3DXRD) and High-Energy Diffraction Microscopy (HEDM) measurements. It is designed to be used for analysis of both near-field and far-field images.

A MATLAB-based software package for microbiological research designed to detect and outline bacterial cells in microscopy images and to analyze fluorescence signal inside them.

Camscope is a multi-threaded program for acquiring and quantitatively analyzing images from an IIDC-compliant FireWire camera. It provides an integrated environment for performing quantitative video microscopy for teaching laboratories.

Image and spectra analysis tool (primarily intended for Raman spectroscopy and Raman confocal microscopy)

EGEETomo aims at creating a grid oriented tool to perform tomographic reconstruction on the field of electron microscopy. It is specially designed to work on the EGEE grid but could be easily adapted to other grid platforms.

Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.

A modular, database-backed system for 5 dimensional (5D) analytical biological microscopy and cell-based screening. Please note - we have moved. Please come visit us and download from our new site at http://cvs.openmicroscopy.org.uk