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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
A tiny c/c++ preprocessor Library designed as a base interface for higher-level scripting languages
It implements everything from the C11 Standard.
TPP is written in c, but offers a c++ api for convenience.
TPP Is able, to generate 25MB of preprocessed code in 8 seconds
Supported compiler extensions are:
- __COUNTER__
- __has_include
- __BASE_FILE__
- __INCLUDE_LEVEL__
- Multi-char constants
- #pragma once
- #include_next
- #warning
- Oh who am I kidding; this supports pretty much everything. - If a pp-extension isn't supported and isn't on the todo-list, tell me about it
New extensions include:
- __TPP_COUNTER
- __TPP_RANDOM
- __TPP_EVAL
- __TPP_LOAD_FILE
Luciphor is a program that performs phospho-site localization on MS/MS data processed by the Trans-Proteomic Pipeline (TPP). It is the first phospho-site prediction program to provide estimates for the false localization rate (FLR).
The program is multithreaded and written in C++ for linux.