Showing 38 open source projects for "java%20game%20script"

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  • 1
    APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required.
    Downloads: 3 This Week
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  • 2
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 16 This Week
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  • 3
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 0 This Week
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  • 4
    ProStack

    ProStack

    ProStack - a platform for image processing and analysis

    ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio
    Downloads: 0 This Week
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  • 5
    Systems Biology Markup Language (SBML)

    Systems Biology Markup Language (SBML)

    A file format for exchanging computational models in systems biology

    The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
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    Downloads: 27 This Week
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  • 6
    SBW (Systems Biology Workbench)

    SBW (Systems Biology Workbench)

    Framework for Systems Biology

    The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM.
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    Downloads: 2 This Week
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  • 7

    NGSpop

    NGSpop: identifying & visualizing sequence variation in deepvariant

    *NOTICE* The official software(NGSpop) will be updated soon, so please visit us in 2/29. Thank you.
    Downloads: 0 This Week
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  • 8
    This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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    Downloads: 1 This Week
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  • 9

    MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data....
    Downloads: 0 This Week
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  • 10
    NOTE: Use of this codebase is NOT RECOMMENDED. This project has been migrated to github at http://jaerproject.net (or https://github.com/SensorsINI/jaer for the Java code). Commits have been disabled for the subversion sourceforge repository and new development is being done on the github repository. Java tools for Address-Event Representation (AER) neuromorphic processing. Uses USB hardware. See wiki at https://sourceforge.net/p/jaer/wiki/
    Downloads: 0 This Week
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  • 11
    MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the helix coil transition and then the melting temperature. Four types of hybridization are possible : DNA/DNA, RNA/RNA, RNA/DNA and mRNA/RNA.
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    Downloads: 18 This Week
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  • 12
    CellCompiler
    The target system of this project is to develop mathematically efficient program code generator from cellml like biological models described by mathematical markup languages.
    Downloads: 0 This Week
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  • 13
    Open Source project for the development of the IEEE 11073-20601 reference implementation.
    Downloads: 0 This Week
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  • 14

    x2fasta

    Tools for reformatting common sequence formats into fasta

    A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format.
    Downloads: 0 This Week
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  • 15
    PlaTypUS

    PlaTypUS

    Plasmodium Typing Utility Software

    The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.
    Downloads: 0 This Week
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  • 16

    [DEPRECATED] Gene Ontology

    The DEPRECATED legacy location of the GO, see http://geneontology.org

    The DEPRECATED legacy of the Gene Ontology project on SourceForge. Please see http://geneontology.org for current software and downloads.
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    Downloads: 0 This Week
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  • 17
    NISA

    NISA

    Image Stack Analyzer

    OpenCV powered image stack analyser for data extraction and preparation. Can be used in conjunction with nanocalcFX. You can get sample data at the NISA homepage. Currently in pre-alpha state.
    Downloads: 0 This Week
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  • 18

    Fylogenetica

    Constructing level-1-networks consistent with a set of quartets

    This project is an implementation of an algorithm by J. Keijsper and R. Pendavingh. The goal of the algorithm is to construct a phylogenetic level-1-network that is consistent with a given set of quartets.
    Downloads: 0 This Week
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  • 19
    Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
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    Downloads: 8 This Week
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  • 20
    A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
    Downloads: 0 This Week
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  • 21
    Scanner based Bioparsers
    Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
    Downloads: 0 This Week
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  • 22
    FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.
    Downloads: 0 This Week
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  • 23
    EMBOSS Suite
    EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
    Downloads: 0 This Week
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  • 24
    molecular simulation program for anisotropic particle shape and potential
    Downloads: 0 This Week
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  • 25
    Sage Bionetworks
    Opensource software projects for genetics and genomics from Sage Bionetworks.
    Downloads: 0 This Week
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