Showing 7 open source projects for "opensource java code"

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  • 1
    Quadric

    Quadric

    Application for simple base-2 binary to base-4 DNA-code conversion

    Quadric is an opensource file converter created by the Jomcraft Network development team. In it's core functionality this small utility can transform base-2 binary files into base-4 DNA-coded human-legible ASCII-files.
    Downloads: 1 This Week
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  • 2
    This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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    Downloads: 1 This Week
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  • 3

    Virtual Cell

    Former home of the Virtual Cell platform (VCell), see http://vcell.org

    This project and all source code has moved to GitHub, see https://github.com/virtualcell
    Downloads: 0 This Week
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  • 4

    BioC

    We describe a simple XML format to share text documents and annotation

    A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are...
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    Downloads: 5 This Week
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  • 5

    CUDAlign

    CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs

    CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU....
    Downloads: 0 This Week
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  • 6

    NIKS

    NIKS (Needle in a K-stack) - detection of mutations in NGS data

    To get access to the code, please check it out with svn as described in the code section.
    Downloads: 0 This Week
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  • 7
    Sage Bionetworks
    Opensource software projects for genetics and genomics from Sage Bionetworks.
    Downloads: 0 This Week
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