Search Results for "multiple sequence alignment" - Page 2
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Showing 39 open source projects for "multiple sequence alignment"
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1
Qwen2.5-Math
A series of math-specific large language models of our Qwen2 series
Qwen2.5-Math is a series of mathematics-specialized large language models in the Qwen2 family, released by Alibaba’s QwenLM. It includes base models (1.5B / 7B / 72B parameters), instruction-tuned versions, and a reward model (RM) to improve alignment. Unlike its predecessor Qwen2-Math, Qwen2.5-Math supports both Chain-of-Thought (CoT) reasoning and Tool-Integrated Reasoning (TIR) for solving math problems, and works in both Chinese and English. It is optimized for solving mathematical... -
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nanochat
The best ChatGPT that $100 can buy
nanochat is a from-scratch, end-to-end “mini ChatGPT” that shows the entire path from raw text to a chatty web app in one small, dependency-lean codebase. The repository stitches together every stage of the lifecycle: tokenizer training, pretraining a Transformer on a large web corpus, mid-training on dialogue and multiple-choice tasks, supervised fine-tuning, optional reinforcement learning for alignment, and finally efficient inference with caching. Its north star is approachability and speed: you can boot a fresh GPU box and drive the whole pipeline via a single script, producing a usable chat model in hours and a clear markdown report of what happened. ... -
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Learn Claude Code
Bash is all you need, write a claude code with only 16 line code
Learn Claude Code is an educational repository that teaches how modern AI coding agents work by walking learners through a sequence of progressively more complex agent implementations, starting with a minimal Bash-based agent and culminating in agents with explicit planning, subagents, and skills. It emphasizes a hands-on learning path where each version (from v0 to v4) adds conceptual building blocks like the core agent loop, todo planning, task decomposition, and domain knowledge skills,... -
4
Step-Audio-EditX
LLM-based Reinforcement Learning audio edit model
Step-Audio-EditX is an open-source, 3 billion-parameter audio model from StepFun AI designed to make expressive and precise editing of speech and audio as easy as text editing. Rather than treating audio editing as low-level waveform manipulation, this model converts speech into a sequence of discrete “audio tokens” (via a dual-codebook tokenizer) — combining a linguistic token stream and a semantic (prosody/emotion/style) token stream — thereby abstracting audio editing into high-level... -
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5
Bert-VITS2
VITS2 backbone with multilingual-bert
...It provides emotional modeling through “emo embeddings,” allowing voices to be conditioned on different affective states during synthesis. Releases include optimizations for Japanese and English alignment, expanded training data, spec caching and pre-generation tools, as well as ONNX export for more lightweight inference deployments. -
6
InternLM
Official release of InternLM series
InternLM is an open-source family of multilingual foundation and chat models, accompanied by an ecosystem that supports training, inference, and application development. The repository highlights multiple model sizes intended to serve different needs, from efficient research and prototyping to more capable deployments for complex scenarios. Beyond model weights, the project emphasizes an ecosystem view, pointing developers to compatible tools and projects across training and inference so... -
7
OpenNMT-tf
Neural machine translation and sequence learning using TensorFlow
...For example, the following instance defines a sequence-to-sequence model with 2 concatenated input features, a self-attentional encoder, and an attentional RNN decoder sharing its input and output embeddings. Sequence to sequence models can be trained with guided alignment and alignment information are returned as part of the translation API. -
8
Metaseq
Repo for external large-scale work
Metaseq is a flexible, high-performance framework for training and serving large-scale sequence models, such as language models, translation systems, and instruction-tuned LLMs. Built on top of PyTorch, it provides distributed training, model sharding, mixed-precision computation, and memory-efficient checkpointing to support models with hundreds of billions of parameters. The framework was used internally at Meta to train models like OPT (Open Pre-trained Transformer) and serves as a... -
9
Fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python
Fairseq(-py) is a sequence modeling toolkit that allows researchers and developers to train custom models for translation, summarization, language modeling and other text generation tasks. We provide reference implementations of various sequence modeling papers. Recent work by Microsoft and Google has shown that data parallel training can be made significantly more efficient by sharding the model parameters and optimizer state across data parallel workers. These ideas are encapsulated in the... -
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10
CLIP Guided Diffusion
A CLI tool/python module for generating images from text
A CLI tool/python module for generating images from text using guided diffusion and CLIP from OpenAI. Text to image generation (multiple prompts with weights). Non-square Generations (experimental) Generate portrait or landscape images by specifying a number to offset the width and/or height. Uses fewer timesteps over the same diffusion schedule. Sacrifices accuracy/alignment for quicker runtime. options: - 25, 50, 150, 250, 500, 1000, ddim25,ddim50,ddim150, ddim250,ddim500,ddim1000 (default: 1000) Prepending a number with ddim will use the ddim scheduler. e.g. ddim25 will use the 25 timstep ddim scheduler. ... -
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XLM (Cross-lingual Language Model)
PyTorch original implementation of Cross-lingual Language Model
...Pretrained checkpoints cover dozens of languages and multiple model sizes, balancing quality and compute needs. -
12
TFKit
Handling multiple nlp task in one pipeline
TFKit is a tool kit mainly for language generation. It leverages the use of transformers on many tasks with different models in this all-in-one framework. All you need is a little change of config. You can use tfkit for model training and evaluation with tfkit-train and tfkit-eval. The key to combine different task together is to make different task with same data format. All data will be in csv format - tfkit will use csv for all task, normally it will have two columns, first columns is the... -
13
Tacotron-2
DeepMind's Tacotron-2 Tensorflow implementation
...The repository is structured as a full training pipeline: dataset preparation, preprocessing into spectrograms, Tacotron training, WaveNet (or Griffin-Lim) vocoder training, and final waveform synthesis. It includes directory layouts and logging directories for multiple datasets such as LJSpeech and M-AILABS en_US/en_UK, making it easier to adapt to new English corpora. Separate log trees track mel-spectrograms, attention plots, evaluation audio, and vocoder outputs, so you can inspect how alignment and audio quality evolve over time. -
14
FineSplice
Enhanced splice junction detection and estimation from RNA-Seq data
Multiple mapping reads with a unique location after filtering are rescued and reallocated to the most reliable candidate location. FineSplice requires Python 2.x (>= 2.6) with the following modules installed: pysam (http://code.google.com/p/pysam/) and scikit-learn (http://scikit-learn.org/). For further details check out our publication: Nucl.
