Search Results for "multiple sequence alignment" - Page 2
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Showing 51 open source projects for "multiple sequence alignment"
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PeerGFS PEER Software - File Sharing and CollaborationPeerGFS is a software-only solution developed to solve file management/file replication challenges in multi-site, multi-platform, and hybrid multi-cloud environments.
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Hephaestus
Semi-Structured Agentic Framework. Workflows build themselves
Hephaestus is an open-source semi-structured agentic framework designed to orchestrate multiple AI agents working together on complex tasks. Instead of relying entirely on predefined workflows, the framework allows agents to dynamically create tasks as they explore a problem space. Developers define high-level phases such as analysis, implementation, and testing, while agents generate specific subtasks within those phases. The system continuously monitors agent behavior and task progression,... -
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LLMSurvey
A Survey of Large Language Models
...The repository organizes hundreds of research papers into thematic sections that reflect the main areas of LLM research, including model architectures, training strategies, evaluation benchmarks, alignment techniques, and downstream applications. By structuring the literature in a navigable format, LLMSurvey allows researchers and practitioners to quickly explore important publications in the field without manually searching through multiple databases. -
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DreamO
A Unified Framework for Image Customization
DreamO is a unified, open-source framework from ByteDance for advanced image customization and generation that consolidates multiple “image manipulation” tasks into a single system, rather than requiring separate specialized models. Built on a diffusion-transformer (DiT) backbone, it supports a diverse set of tasks — including identity preservation, virtual “try-on” (e.g. clothing, accessories), style transfer, IP adaptation (objects/characters), and layout/condition-aware customizations —... -
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VoxelMorph
Unsupervised Learning for Image Registration
...Once the model has been trained, it can rapidly compute the transformation required to register new image pairs, significantly reducing computational time compared to classical registration algorithms. The framework supports both supervised and unsupervised learning approaches and is commonly used in medical imaging applications such as MRI alignment, anatomical analysis, and longitudinal studies. -
Project Management SoftwareProject Insight offers powerful tools for project managers and teams in order to deliver optimal performance and ensure success. An enterprise project and portfolio management software, Project Insight offers personalized dashboards, intelligent scheduling, resource management, collaboration, time and expense tracking, project and portfolio tracking, workflow, and reporting features to help teams work better and get real results. Project Insight is suitable for small teams, mid-market companies, and large enterprises.
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CodeGen
Open-source model for program synthesis
CodeGen is a family of open-source large language models designed specifically for program synthesis and code generation tasks. Developed by Salesforce Research, the models are trained on large datasets containing both natural language and programming language content. This allows them to translate natural language descriptions into functional code across a variety of programming languages. CodeGen supports multi-turn program synthesis, meaning it can generate complex programs through a... -
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Qwen2.5-Math
A series of math-specific large language models of our Qwen2 series
Qwen2.5-Math is a series of mathematics-specialized large language models in the Qwen2 family, released by Alibaba’s QwenLM. It includes base models (1.5B / 7B / 72B parameters), instruction-tuned versions, and a reward model (RM) to improve alignment. Unlike its predecessor Qwen2-Math, Qwen2.5-Math supports both Chain-of-Thought (CoT) reasoning and Tool-Integrated Reasoning (TIR) for solving math problems, and works in both Chinese and English. It is optimized for solving mathematical... -
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Talk to Figma MCP
AI bridge enabling Cursor agents to read and modify Figma designs
cursor-talk-to-figma-mcp is an open source integration that connects AI coding agents with Figma through the Model Context Protocol (MCP). It allows AI tools such as Cursor or other compatible agents to directly communicate with Figma documents and interact with design elements programmatically. Through this integration, an AI assistant can read the structure of a design, retrieve information about nodes or selections, and perform modifications to the layout or content.... -
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nanochat
The best ChatGPT that $100 can buy
nanochat is a from-scratch, end-to-end “mini ChatGPT” that shows the entire path from raw text to a chatty web app in one small, dependency-lean codebase. The repository stitches together every stage of the lifecycle: tokenizer training, pretraining a Transformer on a large web corpus, mid-training on dialogue and multiple-choice tasks, supervised fine-tuning, optional reinforcement learning for alignment, and finally efficient inference with caching. Its north star is approachability and speed: you can boot a fresh GPU box and drive the whole pipeline via a single script, producing a usable chat model in hours and a clear markdown report of what happened. ... -
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Learn Claude Code
Bash is all you need, write a claude code with only 16 line code
Learn Claude Code is an educational repository that teaches how modern AI coding agents work by walking learners through a sequence of progressively more complex agent implementations, starting with a minimal Bash-based agent and culminating in agents with explicit planning, subagents, and skills. It emphasizes a hands-on learning path where each version (from v0 to v4) adds conceptual building blocks like the core agent loop, todo planning, task decomposition, and domain knowledge skills,... -
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dLLM
dLLM: Simple Diffusion Language Modeling
...Unlike traditional autoregressive models that generate text sequentially token by token, diffusion language models generate text through an iterative denoising process that refines masked tokens over multiple steps. This approach allows models to reason over the entire sequence simultaneously and potentially produce more coherent outputs with bidirectional context. The project provides an integrated pipeline that standardizes how diffusion language models are trained, evaluated, and deployed, helping researchers reproduce experiments and compare results more easily. ... -
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Step-Audio-EditX
LLM-based Reinforcement Learning audio edit model
Step-Audio-EditX is an open-source, 3 billion-parameter audio model from StepFun AI designed to make expressive and precise editing of speech and audio as easy as text editing. Rather than treating audio editing as low-level waveform manipulation, this model converts speech into a sequence of discrete “audio tokens” (via a dual-codebook tokenizer) — combining a linguistic token stream and a semantic (prosody/emotion/style) token stream — thereby abstracting audio editing into high-level... -
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Bert-VITS2
VITS2 backbone with multilingual-bert
...It provides emotional modeling through “emo embeddings,” allowing voices to be conditioned on different affective states during synthesis. Releases include optimizations for Japanese and English alignment, expanded training data, spec caching and pre-generation tools, as well as ONNX export for more lightweight inference deployments. -
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InternLM
Official release of InternLM series
InternLM is an open-source family of multilingual foundation and chat models, accompanied by an ecosystem that supports training, inference, and application development. The repository highlights multiple model sizes intended to serve different needs, from efficient research and prototyping to more capable deployments for complex scenarios. Beyond model weights, the project emphasizes an ecosystem view, pointing developers to compatible tools and projects across training and inference so... -
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LLMDataHub
Quick guide (especially) for trending instruction finetuning dataset
...The repository also highlights datasets suitable for reinforcement learning from human feedback and other alignment strategies used in modern language model training. -
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OpenNMT-tf
Neural machine translation and sequence learning using TensorFlow
...For example, the following instance defines a sequence-to-sequence model with 2 concatenated input features, a self-attentional encoder, and an attentional RNN decoder sharing its input and output embeddings. Sequence to sequence models can be trained with guided alignment and alignment information are returned as part of the translation API. -
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Metaseq
Repo for external large-scale work
Metaseq is a flexible, high-performance framework for training and serving large-scale sequence models, such as language models, translation systems, and instruction-tuned LLMs. Built on top of PyTorch, it provides distributed training, model sharding, mixed-precision computation, and memory-efficient checkpointing to support models with hundreds of billions of parameters. The framework was used internally at Meta to train models like OPT (Open Pre-trained Transformer) and serves as a... -
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Fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python
Fairseq(-py) is a sequence modeling toolkit that allows researchers and developers to train custom models for translation, summarization, language modeling and other text generation tasks. We provide reference implementations of various sequence modeling papers. Recent work by Microsoft and Google has shown that data parallel training can be made significantly more efficient by sharding the model parameters and optimizer state across data parallel workers. These ideas are encapsulated in the... -
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CLIP Guided Diffusion
A CLI tool/python module for generating images from text
A CLI tool/python module for generating images from text using guided diffusion and CLIP from OpenAI. Text to image generation (multiple prompts with weights). Non-square Generations (experimental) Generate portrait or landscape images by specifying a number to offset the width and/or height. Uses fewer timesteps over the same diffusion schedule. Sacrifices accuracy/alignment for quicker runtime. options: - 25, 50, 150, 250, 500, 1000, ddim25,ddim50,ddim150, ddim250,ddim500,ddim1000 (default: 1000) Prepending a number with ddim will use the ddim scheduler. e.g. ddim25 will use the 25 timstep ddim scheduler. ... -
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XLM (Cross-lingual Language Model)
PyTorch original implementation of Cross-lingual Language Model
...Pretrained checkpoints cover dozens of languages and multiple model sizes, balancing quality and compute needs. -
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TFKit
Handling multiple nlp task in one pipeline
TFKit is a tool kit mainly for language generation. It leverages the use of transformers on many tasks with different models in this all-in-one framework. All you need is a little change of config. You can use tfkit for model training and evaluation with tfkit-train and tfkit-eval. The key to combine different task together is to make different task with same data format. All data will be in csv format - tfkit will use csv for all task, normally it will have two columns, first columns is the... -
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Tacotron-2
DeepMind's Tacotron-2 Tensorflow implementation
...The repository is structured as a full training pipeline: dataset preparation, preprocessing into spectrograms, Tacotron training, WaveNet (or Griffin-Lim) vocoder training, and final waveform synthesis. It includes directory layouts and logging directories for multiple datasets such as LJSpeech and M-AILABS en_US/en_UK, making it easier to adapt to new English corpora. Separate log trees track mel-spectrograms, attention plots, evaluation audio, and vocoder outputs, so you can inspect how alignment and audio quality evolve over time. -
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qcv
Computer Vision Framework Library (for Linux)
QCV is a Qt-based computer vision framework library that provides an easy to use interface to display, analyze and run computer vision algorithms. The library is provided with practical examples to show what you can do with just a few lines of code. OpenCV is used as the supporting computer vision library. QCV provides interfaces for C and C++. The C interface is a set of simple function calls to allow the user to visualize data and obtain events from the system and user input. The... -
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jaivox
Speech recognition application builder and library
Java library and tools to create open source speech recognition applications. Generates dialogs for conversational interfaces. Works with a popular open source speech recognition library. -
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FineSplice
Enhanced splice junction detection and estimation from RNA-Seq data
Multiple mapping reads with a unique location after filtering are rescued and reallocated to the most reliable candidate location. FineSplice requires Python 2.x (>= 2.6) with the following modules installed: pysam (http://code.google.com/p/pysam/) and scikit-learn (http://scikit-learn.org/). For further details check out our publication: Nucl. -
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fashion-clip
CLIP model fine-tuned for zero-shot fashion product classification
FashionCLIP is a domain-adapted CLIP model fine-tuned specifically for the fashion industry, enabling zero-shot classification and retrieval of fashion products. Developed by Patrick John Chia and collaborators, it builds on the CLIP ViT-B/32 architecture and was trained on over 800K image-text pairs from the Farfetch dataset. The model learns to align product images and descriptive text using contrastive learning, enabling it to perform well across various fashion-related tasks without...
