Search Results for "sequence scaffold, java"
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Showing 244 open source projects for "sequence scaffold, java"
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Workable Hiring Software - Hire The Best People, FastWorkable is the preferred software for today's recruiting industry and HR teams, trusted by over 6,000 companies to streamline their hiring processes. Finding the right person for the job has never been easier—users now possess the ability to manage multiple hiring pipelines at once, from posting a job to sourcing candidates. Workable is also seamlessly integrated between desktop and mobile, allowing admins full control and flexibility all in the ATS without needing additional software.
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Create engaging surveys on your tablet or computer with ease.Create great-looking surveys, forms, polls, voting, questionnaires, NPS, customer satisfaction, customer experience, employee satisfaction surveys... on your computer or tablet, customize the look of your survey however you like, & display collected data with eye-catching and insightful graphics.
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Serverless Java container
A Java wrapper to run Spring, Spring Boot, Jersey, and other apps
...This means you can keep much of your familiar Java-based architecture (controllers, filters, dependency injection) and deploy it in a serverless environment without rewriting everything from scratch. The project supports multiple framework flavors and versions, provides archetypes (Maven/Gradle) to scaffold applications, and maintains separate branches for legacy (Java EE/1.x) and modern (Jakarta EE/2.x+) ecosystems. -
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PlantUML
Generate diagrams from textual description
Generate UML diagram from textual description. PlantUML is not affected by the log4j vulnerability. The easiest way to test PlantUML is in an online solution that has PlantUML embedded, such as our online server. After testing, you may want to install PlantUML locally. Run (or have your software call) PlantUML, using sequenceDiagram.txt as input. The output is an image, which either appears in the other software, or is written to an image file on disk. Diagrams are defined using a simple and... -
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The Ballerina programming language
The Ballerina Programming Language
Ballerina is an open-source programming language for the cloud that makes it easier to use, combine, and create network services. Network primitives in the language make it simpler to write services and run them in the cloud. Structural types with support for openness are used both for static typing within a program and for describing service interfaces. Type-safe, declarative processing of JSON, XML, and tabular data with language-integrated queries. Explicit error handling, static types,... -
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TapTargetView
An implementation of tap targets from the Material Design guidelines
An implementation of tap targets from Google's Material Design guidelines on feature discovery. Prompt users to try features or functionality that can be completed in a single tap, such as saving a location in a map app. Prompt users to try features or functionality that require more than one tap to complete, such as turning on automatic backup in a photo app. Feature discovery prompts have more impact when they are presented to the right users at contextually relevant moments. When... -
Share your screen instantly while on a phone call with CrankWheel for an engaging presentation.Our 10x simpler screen sharing tool is designed for you if you spend your days on the phone with clients, and need to add a visual presentation to close sales. No more scheduling a follow-up meeting, or teaching them to use a complex tool. Send them a text message or email, and they see your screen in seconds.
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Kamon Telemetry
Distributed Tracing, Metrics and Context Propagation for applications
Kamon Telemetry is a set of libraries for instrumenting applications running on the JVM. With Kamon Telemetry you can collect metrics, propagate context across threads and services, and get distributed traces automatically. The best way to get started is by following our installation guides and taking it from there. Have fun with Kamon. Monitor your backend applications, fix performance issues, and get alerted when problems happen. All without being a monitoring expert. Everybody starts... -
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Triton Inference Server
The Triton Inference Server provides an optimized cloud
Triton Inference Server is an open-source inference serving software that streamlines AI inferencing. Triton enables teams to deploy any AI model from multiple deep learning and machine learning frameworks, including TensorRT, TensorFlow, PyTorch, ONNX, OpenVINO, Python, RAPIDS FIL, and more. Triton supports inference across cloud, data center, edge, and embedded devices on NVIDIA GPUs, x86 and ARM CPU, or AWS Inferentia. Triton delivers optimized performance for many query types, including... -
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BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. Please cite the BRIG paper if BRIG is used to generate figures for publications: NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons, BMC Genomics, 12:402. PMID: 21824423
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The MolTools Java library provides tools for building applications that handle nucleotide sequence data. Features include sequence I/O, handling of lists/databases of sequences, calculation of Tm, and other utilities for sequence design.
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PFAAT is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. You can download PFAAT from http://pfaat.sourceforge.net/
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Globalscape Enhanced File Transfer (EFT) is a best-in-class managed file transfer (MFT) solutionGlobalscape’s Enhanced File Transfer (EFT) platform is a comprehensive, user-friendly managed file transfer (MFT) software. Thousands of Windows-Centric Organizations trust Globalscape EFT for their mission-critical file transfers.
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Mahjongg Solitaire
Classic Mahjongg Solitaire with a few handy features to fun gameplay
Classic Mahjongg Solitaire with a few handy features to fun gameplay. (Requires Java). -
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JDiskMark
Java Disk Benchmark Utility
JDiskMark is a powerful and versatile disk benchmarking tool written in Java, designed to help you accurately measure the performance of your storage devices across different operating systems. Whether you're testing HDDs, SSDs, or network drives, JDiskMark provides reliable insights into your disk's read and write speeds. ubuntu/debian: https://sourceforge.net/projects/jdiskmark/files/jdiskmark_0.7.0_amd64.deb/download rhel /... -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.
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JSchemePlus
An hack of Jscheme with a lot of enhancements and additional features.
...It allows to redistribute a script in an executable JAR file of only ~40K and implements all of R4RS with a lot of additional functions, like: (execute command) (random) (sequence from up-to step) (split list element) (string-split string sub-string) (read-all-from-file file) (write-to-file file data) (file-size file) etc... For the complete list read the HELP file or type (help). JSchemePlus needs only the Java Virtual Machine (version 6 or higher) that, in the case, is very easy to download and install. -
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Chess Round Robin Manager
Java Schach Turnierverwaltung / Java Chess Tournament Management
Manage chess round robin tournaments with JKlubTV Version 3.0.0-beta This application stores the data belonging to round robin into a SQLite database. It is intended for webmasters who want to easily manage a club tournament in their own chess club. The HTML tables that are to be published for the website will be created easily by the application. Automatically calculate the total points, Sonneborn Berger points of each player, as well as their sequence DWZ, and sorts the HTML table by the... -
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Billiards Covers
This zip jar contains the current coverings of periodic paths.
Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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flom
Free Lock Manager
...Shell commands, scripts and custom programs can be synchronized inside a single system or in a network of IP connected systems. FLoM supports different types of abstract resources: simple, numeric, set, hierarchical and transactional sequence. libflom, the library shipped with FLoM, allows you to develop your own application using a simple C, C++, Java, Perl, PHP or Python client API. SSL/TLS security for network communication, X.509 certificates for peer to peer mutual authentication. -
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis function and beautiful operation interface of HiPlot (https://hiplot.cn), which I developed based VUE.js and Node.js, etc. -
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GETL
ETL engine based on Groovy
P.S. Dear friends. Repository migration to https://github.com/ascrus/getl . You can download jar file from this site or maven. GETL - based package in Groovy, which automates the work of loading and transforming data. His name is an acronym for «Groovy ETL». GETL is a set of libraries of pre-built classes and objects that can be used to solve problems unpacking, transform and load data into programs written in Groovy, or Java, as well as from any software that supports the work with... -
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Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then... -
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SequenceDiagram
SequencePlugin for IntelliJ IDEA
Sequence Diagram is a tool to generate simple sequence diagrams (UML) from Java, kotlin, scala(Beta), and Groovy (limited) code. -
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JKlubTV
Java Schach Turnierverwaltung / Java Chess Tournament Management
Manage chess round robin tournaments with JKlubTV Version 3.0.0-beta This application stores the data belonging to round robin into a SQLite database. It is intended for webmasters who want to easily manage a club tournament in their own chess club. The HTML tables that are to be published for the website will be created easily by the application. Automatically calculate the total points, Sonneborn Berger points of each player, as well as their sequence DWZ, and sorts the HTML table by the... -
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SpeedGaps
A Java AWT desktop application for Gaps Solitaire (aka "Montana").
A Java AWT desktop application for Gaps Solitaire (aka "Montana"). It uses a reduced card deck to fast play. -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data
